Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F22B5.9
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Query: F22B5.9 CE20708 locus:frs-2 phenylalanyl-tRNA synthetase status:Partially_confirmed SW:Q19713 protein_id:CAA90360.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
B3_4 B3/4 domain 104.6 1.9e-27 1
B5 tRNA synthetase B5 domain 94.8 3.3e-28 1
4A_glucanotrans 4-alpha-glucanotransferase 5.8 0.83 1
PTS_EIIA_2 Phosphoenolpyruvate-dependent sugar p 4.6 7.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
4A_glucanotrans 1/1 153 170 .. 432 449 .. 5.8 0.83
B3_4 1/1 53 192 .. 1 160 [] 104.6 1.9e-27
PTS_EIIA_2 1/1 245 264 .. 1 20 [. 4.6 7.2
B5 1/1 306 375 .. 1 72 [] 94.8 3.3e-28
Alignments of top-scoring domains:
4A_glucanotrans: domain 1 of 1, from 153 to 170: score 5.8, E = 0.83
*->eensVvytgTHDndTlrg<-*
+++++v++gTHD+dT++g
F22B5.9 153 RKRTLVAIGTHDLDTIQG 170
B3_4: domain 1 of 1, from 53 to 192: score 104.6, E = 1.9e-27
*->eylgLdD.vvieisiTPNRaDcLSviGlAREvaAllglplvlpkkde
++ +L+D++v++i+i++NR D+LSv+GlAR ++ +++ ++ p+
F22B5.9 53 AASDLNDqEVYKIDIPANRYDLLSVEGLARAIR-IFKQEIPSPA--- 95
iseapapisdleskipvkvedpPGvleacpryagrvIegvkikpSPlWlq
+++a++p ++ ++ki vk e+ +++p+ +g+v++++++++
F22B5.9 96 YKYADVPKTG-LQKIIVKKETA----QVRPFVVGAVLRDISFDA-----D 135
erLiaaGirpiNnvVDiTNYVmlelGQPlHafDadkisgdkgtlivvrl.
++++++ + + ++++ + ++++G +D+d i+g + +r++
F22B5.9 136 SYASFIDLQDKLHQNICRKRTLVAIG----THDLDTIQGP----FEYRAe 177
AreGEklvtLDgker<-*
A +++k+++L+++++
F22B5.9 178 APKDIKFKPLNQTKE 192
PTS_EIIA_2: domain 1 of 1, from 245 to 264: score 4.6, E = 7.2
*->alltnenIrlnqkAedKeeA<-*
+ l+ +n+++ ++A+dK+ A
F22B5.9 245 ITLNTKNVFIEATATDKQKA 264
B5: domain 1 of 1, from 306 to 375: score 94.8, E = 3.3e-28
*->preirvrlerinrlLGlelsaeeieeiLtrLGfkverv.ggdgdvlk
+re++v+ +in+ +G++l++ee++++L+++ +k+e v ++++ lk
F22B5.9 306 YREMTVTTPEINTKIGINLKDEEMATLLNKMSLKAE-VaAKET--LK 349
VtvPsyRpDIlheeDlvEEvaRiyGY<-*
+vP++R+DIlh++D++E+v+ + GY
F22B5.9 350 IVVPPTRHDILHACDIAEDVGVAFGY 375