Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F22D6.2
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Query: F22D6.2 CE05683 status:Confirmed TR:Q19723 protein_id:CAA95809.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-AN1 AN1-like Zinc finger 85.6 4.9e-24 1
zf-A20 A20-like zinc finger 44.4 2.5e-09 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-A20 1/1 11 35 .. 1 26 [] 44.4 2.5e-09
zf-AN1 1/1 130 170 .. 1 43 [] 85.6 4.9e-24
Alignments of top-scoring domains:
zf-A20: domain 1 of 1, from 11 to 35: score 44.4, E = 2.5e-09
*->plkCrkagCgffgnprtnGlCseCfk<-*
+++Cr agCgffg+++t+G+Cs+Cfk
F22D6.2 11 APSCR-AGCGFFGASATEGYCSQCFK 35
zf-AN1: domain 1 of 1, from 130 to 170: score 85.6, E = 4.9e-24
*->CdvCgKkvgLAtpFhCkYCGnlFCaeHRLpekHdCpgdykteg<-*
C++C+K+vgL t+F+C+ CG+l+C++HR++++H+C++dykt++
F22D6.2 130 CHMCKKRVGL-TGFSCR-CGGLYCGDHRYDQAHNCQFDYKTME 170