hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F22D6.10
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Query:  F22D6.10  CE05691   collagen status:Partially_confirmed TR:Q19725 protein_id:CAA95812.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Collagen      Collagen triple helix repeat (20 copies    95.4    9.8e-25   3
Col_cuticle_N Nematode cuticle collagen N-terminal do    70.8    1.2e-19   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Col_cuticle_N   1/1      15    79 ..     1    66 []    70.8  1.2e-19
Collagen        1/3      96   124 ..    32    60 .]    15.6   0.0083
Collagen        2/3     143   202 ..     1    60 []    49.6  3.8e-12
Collagen        3/3     208   267 ..     1    60 []    46.0  3.8e-11

Alignments of top-scoring domains:
Col_cuticle_N: domain 1 of 1, from 15 to 79: score 70.8, E = 1.2e-19
                   *->SgvAvlacLftvpsiyndInsfqdevmdemdeFKvyaddaWneMvdv
                      S+vA+la+L+++ ++ynd+ +f++ev++e++ FK++ +daW  M+++
    F22D6.10    15    SSVAILAALLFTTFMYNDLYDFHSEVEEELYGFKDIYNDAWFLMTKT 61

                   qrnvrppskpasarfgrpf<-*
                    +++ ++++  s+ ++r f
    F22D6.10    62 ASTKFSSTES-SSEMDRIF    79

Collagen: domain 1 of 3, from 96 to 124: score 15.6, E = 0.0083
                   *->ppGepGpPGppGppGppGppGapGapGpp<-*
                      p+G+pGpPG pG++G  G++G++G  G
    F22D6.10    96    PRGPPGPPGEPGENGTDGQAGQDGQDGNT    124

Collagen: domain 2 of 3, from 143 to 202: score 49.6, E = 3.8e-12
                   *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
                      GppG++Gp G+pG++G+ G+pG +G  G+ Gp G++G+PG +G++G
    F22D6.10   143    GPPGEQGPDGAPGEAGRDGQPGSDGQSGNEGPTGPRGSPGNKGRDGN 189

                   pGppGapGapGpp<-*
                   pG +G pG pG
    F22D6.10   190 PGRDGSPGRPGRD    202

Collagen: domain 3 of 3, from 208 to 267: score 46.0, E = 3.8e-11
                   *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
                      G pG+pG pG +Gp Gp+G+pG+ G pG+ G++G++G+PG +G+ Gp
    F22D6.10   208    GQPGSPGQPGSRGPEGPRGQPGNMGRPGEYGDAGPAGQPGNDGEQGP 254

                   pGppGapGapGpp<-*
                    G  G pG+pG p
    F22D6.10   255 DGVVGIPGEPGLP    267

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