Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F22D6.12
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Query:  F22D6.12  CE29590  locus:gly-19 beta-1,6-N-acetylglucosaminyltransferase status:Confirmed TR:Q19729 protein_id:CAA95816.4

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Branch   Core-2/I-Branching enzyme                      307.3    2.8e-93   1
zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and simil     9.0       0.58   1
TCTP     Translationally controlled tumor protein         2.7        8.1   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TCTP       1/1     120   126 ..     1     7 [.     2.7      8.1
Branch     1/1     116   306 ..     1   238 []   307.3  2.8e-93
zf-CCCH    1/1     345   362 ..     1    18 [.     9.0     0.58

Alignments of top-scoring domains:
TCTP: domain 1 of 1, from 120 to 126: score 2.7, E = 8.1
                   *->MliYKDv<-*
                      Ml+YKD+
    F22D6.12   120    MLVYKDL    126

Branch: domain 1 of 1, from 116 to 306: score 307.3, E = 2.8e-93
                   *->iAYlrvVykdyeqrlerlLsasYHPqNqyCfhlDekSpeefkeeLak
                      ++Y+++Vykd  q +++lLs++YHPqN+yC++++e+S++ f++
    F22D6.12   116    LSYGMLVYKDLPQ-VLFLLSSIYHPQNEYCIAVGENSAPIFQN---- 157

                   dVrvralascfpNVfVlgkeepvtsgGhsilaahlnClkiLlklpsWdWd
                     ++r+++ cf NV+ +++ +p+++g+h+i+ ++++Cl++L++l++ dW
    F22D6.12   158 --LLREVSTCFSNVHFMKR-PPISWGSHEIIDSVYDCLEFLSHLET-DWR 203

                   yfinLsahDyPlkTndELvrifksLnganNFIdhtseiGwkeskraKpii
                   yf++Ls++D+PlkTn+E+v+i+k+Lng++N
    F22D6.12   204 YFQYLSGVDIPLKTNLEMVQILKHLNGTSN-------------------- 233

                   vdpklfkneksdvwkkhyvvdklifwatekrplptslklfkGSawvvLSR
                   v++  +++ +++                 k++++++l+lfk+S++++++R
    F22D6.12   234 VEITNYQQARLTG----------------KNENESPLPLFKSSLSAIIPR 267

                   afVeymiwgwdnlprtLlqyytntyspdEgyfhTlqcNpdl<-*
                   ++++ +   ++n++r+Ll++++nt ++dEg++ Tl++N+d
    F22D6.12   268 KAANQLA--SSNTARKLLEFLWNTEIADEGFWGTLFGNKDQ    306

zf-CCCH: domain 1 of 1, from 345 to 362: score 9.0, E = 0.58
                   *->yktelCrffsrtGtCkyG<-*
                      ++ elC+++++  +C +G
    F22D6.12   345    WDPELCKNYMKDDSCVFG    362



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