Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F22D6.12
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Query: F22D6.12 CE29590 locus:gly-19 beta-1,6-N-acetylglucosaminyltransferase status:Confirmed TR:Q19729 protein_id:CAA95816.4
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Branch Core-2/I-Branching enzyme 307.3 2.8e-93 1
zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and simil 9.0 0.58 1
TCTP Translationally controlled tumor protein 2.7 8.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TCTP 1/1 120 126 .. 1 7 [. 2.7 8.1
Branch 1/1 116 306 .. 1 238 [] 307.3 2.8e-93
zf-CCCH 1/1 345 362 .. 1 18 [. 9.0 0.58
Alignments of top-scoring domains:
TCTP: domain 1 of 1, from 120 to 126: score 2.7, E = 8.1
*->MliYKDv<-*
Ml+YKD+
F22D6.12 120 MLVYKDL 126
Branch: domain 1 of 1, from 116 to 306: score 307.3, E = 2.8e-93
*->iAYlrvVykdyeqrlerlLsasYHPqNqyCfhlDekSpeefkeeLak
++Y+++Vykd q +++lLs++YHPqN+yC++++e+S++ f++
F22D6.12 116 LSYGMLVYKDLPQ-VLFLLSSIYHPQNEYCIAVGENSAPIFQN---- 157
dVrvralascfpNVfVlgkeepvtsgGhsilaahlnClkiLlklpsWdWd
++r+++ cf NV+ +++ +p+++g+h+i+ ++++Cl++L++l++ dW
F22D6.12 158 --LLREVSTCFSNVHFMKR-PPISWGSHEIIDSVYDCLEFLSHLET-DWR 203
yfinLsahDyPlkTndELvrifksLnganNFIdhtseiGwkeskraKpii
yf++Ls++D+PlkTn+E+v+i+k+Lng++N
F22D6.12 204 YFQYLSGVDIPLKTNLEMVQILKHLNGTSN-------------------- 233
vdpklfkneksdvwkkhyvvdklifwatekrplptslklfkGSawvvLSR
v++ +++ +++ k++++++l+lfk+S++++++R
F22D6.12 234 VEITNYQQARLTG----------------KNENESPLPLFKSSLSAIIPR 267
afVeymiwgwdnlprtLlqyytntyspdEgyfhTlqcNpdl<-*
++++ + ++n++r+Ll++++nt ++dEg++ Tl++N+d
F22D6.12 268 KAANQLA--SSNTARKLLEFLWNTEIADEGFWGTLFGNKDQ 306
zf-CCCH: domain 1 of 1, from 345 to 362: score 9.0, E = 0.58
*->yktelCrffsrtGtCkyG<-*
++ elC+++++ +C +G
F22D6.12 345 WDPELCKNYMKDDSCVFG 362