Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F22D6.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  F22D6.3  CE05684  locus:nrs-1 asparaginyl-tRNA synthetase status:Partially_confirmed SW:Q19722 protein_id:CAA95808.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
tRNA-synt_2  tRNA synthetases class II (D, K and N)     450.3   1.6e-131   1
tRNA_anti    OB-fold nucleic acid binding domain         77.6    2.3e-20   1
tRNA-synt_2b tRNA synthetase class II core domain (G,     6.8        0.6   1
Trehalase    Trehalase                                    4.2        1.8   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
tRNA_anti      1/1     124   204 ..     1    89 []    77.6  2.3e-20
tRNA-synt_2b   1/1     229   278 ..     1    55 [.     6.8      0.6
Trehalase      1/1     277   287 ..   642   652 .]     4.2      1.8
tRNA-synt_2    1/1     221   541 ..     1   380 []   450.3 1.6e-131

Alignments of top-scoring domains:
tRNA_anti: domain 1 of 1, from 124 to 204: score 77.6, E = 2.3e-20
                   *->VtvaGrVhsvrdlgtfknadggggkliFltLrDgtgGriqvvvfnde
                      V+++++Vh++r++g         + l+Fl+LrDg+ G++q+v++++
     F22D6.3   124    VSIKAWVHRLRRQG---------KSLMFLVLRDGY-GFLQCVLNDKL 160

                   vpeleklak.lkeGdvVgVtGkvkkrpe...atGelellveeievl<-*
                   +    ++a +l +++ V+V+G +k+ p +++a++++el+v+++ev+
     F22D6.3   161 C--QSYDAVtLSTETSVQVYGIIKALPDgksAPDGHELTVDYWEVI    204

tRNA-synt_2b: domain 1 of 1, from 229 to 278: score 6.8, E = 0.6
                   *->GfydllP....lGarlrralenfirevfelikfeiGieyGyqevdtP
                      ++ ++ +++ ++ +r+r a  +++r++f     + G    y+ev +P
     F22D6.3   229    RHLVIRGenasRILRIRAAATRAMRDHFF----AAG----YTEVAPP 267

                   ilepeeelwkgs<-*
                   +l+ + ++  gs
     F22D6.3   268 TLVQT-QVEGGS    278

Trehalase: domain 1 of 1, from 277 to 287: score 4.2, E = 1.8
                   *->GVvLelLdlyg<-*
                      G++L++Ld+yg
     F22D6.3   277    GSTLFGLDYYG    287

tRNA-synt_2: domain 1 of 1, from 221 to 541: score 450.3, E = 1.6e-131
                   *->dqetRyrqRyldLrmneesravfrvRskiiaaiRrfFdekGFlEVeT
                       +++++++R+l +r +e++++++r+R++ ++a+R +F + G++EV++
     F22D6.3   221    GVDVMLDNRHLVIR-GENASRILRIRAAATRAMRDHFFAAGYTEVAP 266

                   PmlseavstdieGGGEmFRVTLDLEnLprvsagatpFitsyfgLdkelYL
                   P+l   v+t++eG                   g+t+F  +y+g  +++YL
     F22D6.3   267 PTL---VQTQVEG-------------------GSTLFGLDYYG--EPAYL 292

                   riSpeLylkrLivgGlerVyeIgrvFRnEkgnthrHnpEFTmlEfYmAfa
                   ++S++Lyl+++ ++ l++Vy+I+ + R+Ek+ t+rH++E+ ++E+++Af+
     F22D6.3   293 TQSSQLYLETCNAA-LGDVYCISQSYRAEKSRTRRHLSEYQHVEAECAFI 341

                   dhyhDLmeltEeLlkqivkellgstqvkYdPDkqgeeldfvkpfkrismv
                   + ++ Lm+++E L++++v++ll++     +      + + + +f+++ ++
     F22D6.3   342 T-FDQLMDRIEALVCDTVDRLLAD-----P------VTKSLIEFVNPGYK 379

                   dalekykgvdpinefflrltyedAieilkehgiEieepkefdlGtllqel
                         + ++     f r+ y++Aie+l+++++ +e ++ f +G++++e+
     F22D6.3   380 A-----PARP-----FKRMPYKEAIEWLQKNDVRNEMGEKFVYGEDIAEA 419

                   feefveetlikdtdPtFvydfPleisPlamrsdaedprvterfdlfipGr
                   +e+ +++t++    P+ +++fP  i++++m ++a+d+++te++dl++pG+
     F22D6.3   420 AERRMTDTIG-V--PILLNRFPHGIKAFYMPRCADDNELTESVDLLMPGV 466

                   GEIanGfqeLnDpddqreRFeeQarakaaGddeadeidedfvdaLeYGmP
                   GEI++G++++++ d + + Fe      + G+d ++  ++++ d+++YG++
     F22D6.3   467 GEIVGGSMRIWKEDQLLAAFE------KGGLDSKN--YYWYMDQRKYGSV 508

                   PhaGlGlGiDRliMlltdahnIRDViLFPrdrp<-*
                   Ph+G+GlG++R+i++ltd+++IRDV+L+Pr+ +
     F22D6.3   509 PHGGYGLGLERFICWLTDTNHIRDVCLYPRFVG    541



[DB home][top]