Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F22D6.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F22D6.3 CE05684 locus:nrs-1 asparaginyl-tRNA synthetase status:Partially_confirmed SW:Q19722 protein_id:CAA95808.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
tRNA-synt_2 tRNA synthetases class II (D, K and N) 450.3 1.6e-131 1
tRNA_anti OB-fold nucleic acid binding domain 77.6 2.3e-20 1
tRNA-synt_2b tRNA synthetase class II core domain (G, 6.8 0.6 1
Trehalase Trehalase 4.2 1.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
tRNA_anti 1/1 124 204 .. 1 89 [] 77.6 2.3e-20
tRNA-synt_2b 1/1 229 278 .. 1 55 [. 6.8 0.6
Trehalase 1/1 277 287 .. 642 652 .] 4.2 1.8
tRNA-synt_2 1/1 221 541 .. 1 380 [] 450.3 1.6e-131
Alignments of top-scoring domains:
tRNA_anti: domain 1 of 1, from 124 to 204: score 77.6, E = 2.3e-20
*->VtvaGrVhsvrdlgtfknadggggkliFltLrDgtgGriqvvvfnde
V+++++Vh++r++g + l+Fl+LrDg+ G++q+v++++
F22D6.3 124 VSIKAWVHRLRRQG---------KSLMFLVLRDGY-GFLQCVLNDKL 160
vpeleklak.lkeGdvVgVtGkvkkrpe...atGelellveeievl<-*
+ ++a +l +++ V+V+G +k+ p +++a++++el+v+++ev+
F22D6.3 161 C--QSYDAVtLSTETSVQVYGIIKALPDgksAPDGHELTVDYWEVI 204
tRNA-synt_2b: domain 1 of 1, from 229 to 278: score 6.8, E = 0.6
*->GfydllP....lGarlrralenfirevfelikfeiGieyGyqevdtP
++ ++ +++ ++ +r+r a +++r++f + G y+ev +P
F22D6.3 229 RHLVIRGenasRILRIRAAATRAMRDHFF----AAG----YTEVAPP 267
ilepeeelwkgs<-*
+l+ + ++ gs
F22D6.3 268 TLVQT-QVEGGS 278
Trehalase: domain 1 of 1, from 277 to 287: score 4.2, E = 1.8
*->GVvLelLdlyg<-*
G++L++Ld+yg
F22D6.3 277 GSTLFGLDYYG 287
tRNA-synt_2: domain 1 of 1, from 221 to 541: score 450.3, E = 1.6e-131
*->dqetRyrqRyldLrmneesravfrvRskiiaaiRrfFdekGFlEVeT
+++++++R+l +r +e++++++r+R++ ++a+R +F + G++EV++
F22D6.3 221 GVDVMLDNRHLVIR-GENASRILRIRAAATRAMRDHFFAAGYTEVAP 266
PmlseavstdieGGGEmFRVTLDLEnLprvsagatpFitsyfgLdkelYL
P+l v+t++eG g+t+F +y+g +++YL
F22D6.3 267 PTL---VQTQVEG-------------------GSTLFGLDYYG--EPAYL 292
riSpeLylkrLivgGlerVyeIgrvFRnEkgnthrHnpEFTmlEfYmAfa
++S++Lyl+++ ++ l++Vy+I+ + R+Ek+ t+rH++E+ ++E+++Af+
F22D6.3 293 TQSSQLYLETCNAA-LGDVYCISQSYRAEKSRTRRHLSEYQHVEAECAFI 341
dhyhDLmeltEeLlkqivkellgstqvkYdPDkqgeeldfvkpfkrismv
+ ++ Lm+++E L++++v++ll++ + + + + +f+++ ++
F22D6.3 342 T-FDQLMDRIEALVCDTVDRLLAD-----P------VTKSLIEFVNPGYK 379
dalekykgvdpinefflrltyedAieilkehgiEieepkefdlGtllqel
+ ++ f r+ y++Aie+l+++++ +e ++ f +G++++e+
F22D6.3 380 A-----PARP-----FKRMPYKEAIEWLQKNDVRNEMGEKFVYGEDIAEA 419
feefveetlikdtdPtFvydfPleisPlamrsdaedprvterfdlfipGr
+e+ +++t++ P+ +++fP i++++m ++a+d+++te++dl++pG+
F22D6.3 420 AERRMTDTIG-V--PILLNRFPHGIKAFYMPRCADDNELTESVDLLMPGV 466
GEIanGfqeLnDpddqreRFeeQarakaaGddeadeidedfvdaLeYGmP
GEI++G++++++ d + + Fe + G+d ++ ++++ d+++YG++
F22D6.3 467 GEIVGGSMRIWKEDQLLAAFE------KGGLDSKN--YYWYMDQRKYGSV 508
PhaGlGlGiDRliMlltdahnIRDViLFPrdrp<-*
Ph+G+GlG++R+i++ltd+++IRDV+L+Pr+ +
F22D6.3 509 PHGGYGLGLERFICWLTDTNHIRDVCLYPRFVG 541