Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F22D6.6
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Query: F22D6.6 CE05687 status:Partially_confirmed TR:Q19731 protein_id:CAA95818.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TUDOR Tudor domain 137.7 2e-37 2
NAPRTase Nicotinate phosphoribosyltransferase (NAPRTa 3.0 3.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TUDOR 1/2 48 163 .. 1 124 [] 76.4 8.1e-20
NAPRTase 1/1 253 267 .. 499 513 .] 3.0 3.2
TUDOR 2/2 385 509 .. 1 124 [] 61.7 9.8e-16
Alignments of top-scoring domains:
TUDOR: domain 1 of 2, from 48 to 163: score 76.4, E = 8.1e-20
*->epegstvdvvvshiespgeFyvqqpksdskkleklmeelqeyysskp
+++ + +v ++esp++++v l++++ + + ++
F22D6.6 48 IVLSRSANVEFLRAESPSRIWV-----------RLTNHITDSALTFR 83
p..vaelptp.vgdgcvavfseDgkWyRAri.tvelddelveVffvDyGn
++ + +++t ++++++ +++++ ++R+ri +v++++el +Vff+D
F22D6.6 84 EpfELTQKTTfKIGDYALAPTDERVYRRCRIvDVCRNNELLKVFFIDDAV 133
tetvplsdlrplpppefalLPpqaikcrLag<-*
+ +v++++l +l+ ++ +++P+qai++++ g
F22D6.6 134 IAWVQPECLGELD-QHYMYYPWQAIQVSMFG 163
NAPRTase: domain 1 of 1, from 253 to 267: score 3.0, E = 3.2
*->dffldlLktvFelge<-*
+ff++ +++vFe+ e
F22D6.6 253 EFFDAAYHQVFEVAE 267
TUDOR: domain 2 of 2, from 385 to 509: score 61.7, E = 9.8e-16
*->epegstvdvvvshiespgeFyvqqpksdskkleklmeelqeyysskp
e+ + +v +p ++++ ++ +l ++ e+l +yys+++
F22D6.6 385 NDEEQLKEV------DPVDWMI----YGNDQLLSMAEQLDTYYSNPK 421
p......vaelptp.vgdgcvavfse.......DgkWyRAritvelddel
++++ + ++ + + + + +++av+++++++ g+W R++i +++d
F22D6.6 422 NrkplkaEEIQSMRkEKRDVFAVCAVneekamyTGEWQRVLI--VECDTF 469
veVffvDyGntetvplsdlrplpppefalLPpqaikcrLag<-*
+eV+f+D G + +v + l+ + +++++ Pp++++ +++g
F22D6.6 470 AEVRFLDSGGRDMVLTGSLYKIHRQHCRF-PPMCLRLSMHG 509