Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F22E10.3
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Query: F22E10.3 CE03262 locus:pgp-14 p-glycoprotein (MDR) status:Partially_confirmed TR:Q19735 protein_id:CAA91801.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 432.6 3.5e-126 2
ABC_membrane ABC transporter transmembrane region 271.6 1e-77 2
SKI Shikimate kinase 11.8 0.032 2
APS_kinase Adenylylsulfate kinase 10.8 0.042 1
AIG1 AIG1 family 8.3 0.38 2
ERG2_Sigma1R ERG2 and Sigma1 receptor like protein 7.2 0.27 1
Phage_holin_3 Phage holin family (Lysis protein S) 7.1 0.69 1
DUF368 Domain of unknown function (DUF358) 4.6 2.6 1
Zip ZIP Zinc transporter 3.5 7.2 1
FeoB Ferrous iron transport protein B 3.0 2.7 1
ATP-bind Conserved hypothetical ATP binding prot 2.7 9.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ERG2_Sigma1R 1/1 98 114 .. 1 17 [. 7.2 0.27
Phage_holin_3 1/1 108 125 .. 54 71 .. 7.1 0.69
Zip 1/1 140 164 .. 339 363 .] 3.5 7.2
ABC_membrane 1/2 105 382 .. 1 285 [] 179.7 4.7e-50
FeoB 1/1 379 390 .. 727 738 .] 3.0 2.7
AIG1 1/2 458 472 .. 1 15 [. 4.3 4.9
SKI 1/2 458 472 .. 1 15 [. 4.1 5.3
ABC_tran 1/2 457 641 .. 1 199 [] 219.3 2.3e-62
DUF368 1/1 986 1018 .. 306 345 .] 4.6 2.6
ABC_membrane 2/2 765 1044 .. 1 285 [] 99.9 5e-26
AIG1 2/2 1115 1129 .. 1 15 [. 4.8 3.5
APS_kinase 1/1 1113 1129 .. 1 17 [. 10.8 0.042
ATP-bind 1/1 1116 1129 .. 1 14 [. 2.7 9.5
SKI 2/2 1115 1129 .. 1 15 [. 8.6 0.28
ABC_tran 2/2 1114 1298 .. 1 199 [] 218.5 4.1e-62
Alignments of top-scoring domains:
ERG2_Sigma1R: domain 1 of 1, from 98 to 114: score 7.2, E = 0.27
*->rklrflllflavvavLi<-*
+k+ +lllf++ ++++i
F22E10.3 98 KKFDYLLLFIGTICAII 114
Phage_holin_3: domain 1 of 1, from 108 to 125: score 7.1, E = 0.69
*->AamCAliAWvardlLell<-*
+++CA+i++v ++L+l+
F22E10.3 108 GTICAIISGVSQPILALV 125
Zip: domain 1 of 1, from 140 to 164: score 3.5, E = 7.2
*->qsdlklsllqllalllGfalMllia<-*
++ ++++ ++++++lG+++ i+
F22E10.3 140 SKQFRNKANENVYIFLGIGIFISIT 164
ABC_membrane: domain 1 of 2, from 105 to 382: score 179.7, E = 4.7e-50
*->lliailllilagatalvtfplllgrlldsgfplsdgnddharsslis
l+i+ +++i++g+ ++ +l++gr+++ + + ++++ +r+ +
F22E10.3 105 LFIGTICAIISGVSQPI-LALVSGRVTNALLVYPPTSKQ-FRNKANE 149
lailslfavfvliglllqgsfyllagerlgqrlrkrlfrallrqilglfd
+ ++ +++++++i++++++++++ + ++ +r++ +++++ + ++l++
F22E10.3 150 NVYI-FLGIGIFISITNFIQYMC--FQHCCTRVMAQMRHRFVYSVLRQNA 196
sffdtnsvGeltsRltnDvekirdglgeklgllfqslatvvgglivmfyy
+fd+n++G++t++l + +e+ir+g+g+klg+l++ +a+++++++v+++y
F22E10.3 197 GWFDKNHSGTITTKLNDSMERIREGIGDKLGVLLRGFAMLIAAIVVAYIY 246
swkLtLillailpllillsavlakklrklsrkeqkayakagsvaeEslsg
w+L+ ++l + p +++ + la+ +++ ++ke ++kags+aeEsl+g
F22E10.3 247 EWRLASMMLGVAPTCCICMSLLARQMTSTTIKELIGVGKAGSIAEESLMG 296
irTVkafgrEeyelerfdkaledaekagikkaiiagllfgitqlisylsy
+rTV+af+++e ++ r++ +le+ +k +++k++++g+++g ++ + +
F22E10.3 297 VRTVQAFNGQEEMVGRYEAELEKGRKFAVWKGFWSGFFGGLFFFWLFSFL 346
alalwfGgylvasvisgglsvgtlfaflslgnqligpl<-*
+ +G+yl ++ + ++g++f++ + +++ + l
F22E10.3 347 GCGMLYGAYLL--KVGIITTPGDVFIVVMSMLLGAYFL 382
FeoB: domain 1 of 1, from 379 to 390: score 3.0, E = 2.7
*->Ayvlglifyqlg<-*
Ay+lgli+++++
F22E10.3 379 AYFLGLISPHMM 390
AIG1: domain 1 of 2, from 458 to 472: score 4.3, E = 4.9
*->rnIVLVGRTGNGKSA<-*
+ LVG +G+GKS+
F22E10.3 458 TSVALVGHSGCGKST 472
SKI: domain 1 of 2, from 458 to 472: score 4.1, E = 5.3
*->rnifLIGmmGaGKsT<-*
++ L+G G+GKsT
F22E10.3 458 TSVALVGHSGCGKST 472
ABC_tran: domain 1 of 2, from 457 to 641: score 219.3, E = 2.3e-62
*->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
G +alvG++G+GKST l+++l++p++G +++dG d++ l+
F22E10.3 457 GTSVALVGHSGCGKSTSVGLLTRLYEPEAGNVTIDG-TDVRELN--- 499
erlerlrknigvvfQdptlfpnpeltvreniafglrlslglskdeqrdrl
+e+lr+ +g v Q+p+lf + t+ +n+++g + +++ + ++
F22E10.3 500 --IEWLRNTVGIVQQEPILF---NDTIHNNLLIGNPG---STRETMIEVC 541
kkagaeelLerlglgydhlldrrpgtLSGGqkQRvaiARaLltkpklLlL
k+a+a++++e+++ gyd+l+++ + +LSGGqkQRvaiAR L+++pk+LlL
F22E10.3 542 KMANAHDFIEKMPKGYDTLIGDGGVQLSGGQKQRVAIARTLIRDPKVLLL 591
DEPTagLDpasraqllellrelrqqggTvllitHdldlldrlaDrilvle
DE+T++LD++s+ ++ +l+ + g+T+++i H+l +r aD+i++ e
F22E10.3 592 DEATSALDAQSESIVQSALNNASK-GRTTIMIAHRLST-IREADKIVFFE 639
dG<-*
+G
F22E10.3 640 KG 641
DUF368: domain 1 of 1, from 986 to 1018: score 4.6, E = 2.6
*->naglsaainysgvvvvsllslvvafilGtlTsqPafaLvl<-*
+ g+ +ainys + +++++ ++ ++G + +++
F22E10.3 986 KKGMIEAINYSLTQSFMYFMMCFTYAVG-------IRIIY 1018
ABC_membrane: domain 2 of 2, from 765 to 1044: score 99.9, E = 5e-26
*->lliailllilagatalvtfplllgrlldsgfplsdgnddh...arss
++++ +++++ g+ ++ +l++g +++ gf + ++++ +++ ++
F22E10.3 765 MFLGTVFALIRGLELPA-LALIFGWVFE-GFTFVPYGGRMmhrMAMA 809
lislailslfavfvliglllqgsfyllagerlgqrlrkrlfrallrqilg
i a + +++v++ + +++ + + +e+l++r r++ fr+ll q+ +
F22E10.3 810 VIAFASV-GVGVWFSQLASSVLFAVV--SENLSMRFRVQSFRNLLYQDAS 856
lfdsffdtnsvGeltsRltnDvekirdglgeklgllfqslatvvgglivm
+fd+ + + G l++Rl++D+ +i+ ++++++ +la +++ ++++
F22E10.3 857 YFDN--PAHAPGKLITRLASDAPNIKAVVDARMLQVIYALAAIIANIAIA 904
fyyswkLtLillailpllillsavlakklrklsrkeqkayakagsvaeEs
f+y+w+ ++ l ll ++ ++ +l + eq ++++ag++a+E+
F22E10.3 905 FIYCWQIGILGT-SLILLLAFVMIGLAYKISLMNVEQIQNDDAGRIAIEI 953
lsgirTVkafgrEeyelerfdkaledaekagikkaiiagllfgitqlisy
+++++T++ ++r e + ++++ + +++ +kk+ i +++ + tq+++y
F22E10.3 954 IENVKTIQLLTRCELFFDHYQTSSKQQKRSELKKGMIEAINYSLTQSFMY 1003
lsyalalwfGg.ylvasvisgglsvgtlfaflslgnqligpl<-*
+++ + + +G ++ ++ +s++ ++ ++a ++lg+++ +
F22E10.3 1004 FMMCFTYAVGIrIIYQGDKSSDDTFKGIIA-MMLGAVAVMNS 1044
[output cut off at A = 10 top alignments]