Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F22G12.4
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Query: F22G12.4 CE28920 Ank repeat (6 domains) status:Partially_confirmed TR:O45398 protein_id:CAB07368.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ank Ankyrin repeat 193.6 3e-54 18
FYVE FYVE zinc finger 62.2 4.1e-16 1
CutA1 CutA1 divalent ion tolerance protein 4.2 6.9 1
Adeno_E3B Adenovirus E3B protein 3.3 8.4 1
PcrB PcrB family 2.8 10 1
ELH Egg-laying hormone precursor 1.4 6.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CutA1 1/1 14 35 .. 1 24 [. 4.2 6.9
PcrB 1/1 24 39 .. 210 225 .. 2.8 10
ank 1/18 27 44 .. 16 33 .] 8.6 1.2
ank 2/18 46 72 .. 1 27 [. 12.3 0.1
ank 3/18 115 147 .. 1 33 [] 20.5 0.00048
Adeno_E3B 1/1 164 173 .. 80 89 .] 3.3 8.4
ank 4/18 148 183 .. 1 33 [] 5.4 9.7
ank 5/18 218 241 .. 1 24 [. 7.6 2.3
ank 6/18 252 284 .. 1 33 [] 24.6 3.3e-05
ank 7/18 285 310 .. 1 26 [. 1.4 1.3e+02
ank 8/18 327 351 .. 9 33 .] 3.9 25
ank 9/18 352 384 .. 1 33 [] 16.0 0.0093
ank 10/18 401 433 .. 1 33 [] 10.9 0.26
ELH 1/1 405 433 .. 234 262 .] 1.4 6.1
ank 11/18 441 473 .. 1 33 [] 21.4 0.00026
ank 12/18 474 497 .. 1 24 [. 8.7 1.1
ank 13/18 509 541 .. 1 33 [] 3.4 36
ank 14/18 543 576 .. 1 33 [] 11.2 0.21
ank 15/18 579 611 .. 1 33 [] 10.3 0.4
ank 16/18 612 644 .. 1 33 [] 21.0 0.00036
ank 17/18 645 678 .. 1 33 [] 6.0 6.8
ank 18/18 734 766 .. 1 33 [] 29.8 1.1e-06
FYVE 1/1 793 849 .. 1 66 [. 62.2 4.1e-16
Alignments of top-scoring domains:
CutA1: domain 1 of 1, from 14 to 35: score 4.2, E = 6.9
*->sivVlvTaPdeesAekLArkLvEe<-*
+++++ T++d e+++ +A+ LvE+
F22G12.4 14 FSIIF-TFSD-EKSRQIAAQLVEK 35
PcrB: domain 1 of 1, from 24 to 39: score 2.8, E = 10
*->ksgEqAkemaeaGADv<-*
ks+++A++++e GADv
F22G12.4 24 KSRQIAAQLVEKGADV 39
ank: domain 1 of 18, from 27 to 44: score 8.6, E = 1.2
*->evvklLlqrGAdlnaqdd<-*
++++ L+++GAd+n++d
F22G12.4 27 QIAAQLVEKGADVNVKDA 44
ank: domain 2 of 18, from 46 to 72: score 12.3, E = 0.1
*->dGnTPLHlAakrgnlevvklLlqrGAd<-*
+G+T L+ +++ nl+ + +Ll +GAd
F22G12.4 46 RGETILMRMCRKENLSAMDFLLGNGAD 72
ank: domain 3 of 18, from 115 to 147: score 20.5, E = 0.00048
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+ +TPL +A++ +n+ +++ L++ G + ++++
F22G12.4 115 EERTPLICAVMANNHIMCETLIRSGVNCDVTTS 147
Adeno_E3B: domain 1 of 1, from 164 to 173: score 3.3, E = 8.4
*->NqeIAaLLrL<-*
N+ IA+LL L
F22G12.4 164 NRRIAELLML 173
ank: domain 4 of 18, from 148 to 183: score 5.4, E = 9.7
*->dGnTPLHlAakrg...nlevvklLlqrGAdlnaqdd<-*
+G T+L ++ + +n ++++lL+ +GA +n +
F22G12.4 148 EGHTALSTCLLMSdapNRRIAELLMLNGAGVNFAIC 183
ank: domain 5 of 18, from 218 to 241: score 7.6, E = 2.3
*->dGnTPLHlAakrgnlevvklLlqr<-*
+G+T+ H+Aa+ g +e+++ ++++
F22G12.4 218 RGQTACHVAAEAGAPEILSKIVEA 241
ank: domain 6 of 18, from 252 to 284: score 24.6, E = 3.3e-05
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
d +T+L +A+++ +l+ ++ ++ GAd+na+d
F22G12.4 252 DDRTALDIAVEKRDLKSARICIKGGADVNARDA 284
ank: domain 7 of 18, from 285 to 310: score 1.4, E = 1.3e+02
*->dGnTPLHlAakrgnlevvklLlqrGA<-*
+G+T L A++ ++ e+ +L+++ A
F22G12.4 285 NGQTLLVKAILANDDEMGVFLIEHDA 310
[output cut off at A = 10 top alignments]