Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F25B5.6a
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Query:  F25B5.6a  CE01923   tetrahydrofolylpolyglutamate synthase status:Partially_confirmed SW:Q09509 protein_id:AAC46527.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
Mur_ligase_C Mur ligase family, glutamate ligase doma    29.4    6.8e-07   1
Mur_ligase   Mur ligase family, catalytic domain         17.8    0.00031   1
Pox_P35      Poxvirus P35 protein                         2.3        7.3   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Pox_P35        1/1      90   120 ..   206   230 ..     2.3      7.3
Mur_ligase     1/1     167   303 ..   125   290 ..    17.8  0.00031
Mur_ligase_C   1/1     339   367 ..     1    31 [.    29.4  6.8e-07

Alignments of top-scoring domains:
Pox_P35: domain 1 of 1, from 90 to 120: score 2.3, E = 7.3
                   *->IIrvs......salklvdEIiKsgGissgLs<-*
                      II+vs++++++sa + v+ I++s G+++g++
    F25B5.6a    90    IIHVSgtkgkgSACAFVESILRSQGLRTGFY    120

Mur_ligase: domain 1 of 1, from 167 to 303: score 17.8, E = 0.00031
                   *->fevtlasalalladagvdylvmEvsshglqlgstlslkPdiaviTNi
                      f +++++a++ +++ +v++ ++Ev+ +g+ + +  + kP +  +T +
    F25B5.6a   167    FKFLTLLAFRIFVKLNVQVMILEVGIGGEYDCTNVVEKPKVCGVTTL 213

                   geDHLDyhggdtlenyaaaKaelfknptegdglvlngdavlnaddekgvk
                   ++DH+ ++g + l ++a  Ka++fk  ++ ++ +  ++a+ +    ++ k
    F25B5.6a   214 DYDHMSILG-NKLSEIAWHKAGIFKESVPAFYSPTTTEAEEVLIARAISK 262

                   aaaragsarvdyysdadlrakdiqqdgsgaqsftlkgpgkgvlpevelpL
                    +  +  + v+ y                            +++++++++
    F25B5.6a   263 HVPLFQTPPVSAY---------------------------QFARDISPGI 285

                   pGheHNvlNALAAiAaAll<-*
                    G +H+ +N+++A+ ++++
    F25B5.6a   286 RG-AHQFSNVSMALQLVRA    303

Mur_ligase_C: domain 1 of 1, from 339 to 367: score 29.4, E = 6.8e-07
                   *->vprgRlEvvgenngvtvidDSYAHnPdaiea<-*
                      +p gR ++v++ ++vt++ D +AH+P ++ea
    F25B5.6a   339    WP-GRSQIVSTDRNVTYLLD-GAHTPKSMEA    367



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