Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F25B5.6a
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Query: F25B5.6a CE01923 tetrahydrofolylpolyglutamate synthase status:Partially_confirmed SW:Q09509 protein_id:AAC46527.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Mur_ligase_C Mur ligase family, glutamate ligase doma 29.4 6.8e-07 1
Mur_ligase Mur ligase family, catalytic domain 17.8 0.00031 1
Pox_P35 Poxvirus P35 protein 2.3 7.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pox_P35 1/1 90 120 .. 206 230 .. 2.3 7.3
Mur_ligase 1/1 167 303 .. 125 290 .. 17.8 0.00031
Mur_ligase_C 1/1 339 367 .. 1 31 [. 29.4 6.8e-07
Alignments of top-scoring domains:
Pox_P35: domain 1 of 1, from 90 to 120: score 2.3, E = 7.3
*->IIrvs......salklvdEIiKsgGissgLs<-*
II+vs++++++sa + v+ I++s G+++g++
F25B5.6a 90 IIHVSgtkgkgSACAFVESILRSQGLRTGFY 120
Mur_ligase: domain 1 of 1, from 167 to 303: score 17.8, E = 0.00031
*->fevtlasalalladagvdylvmEvsshglqlgstlslkPdiaviTNi
f +++++a++ +++ +v++ ++Ev+ +g+ + + + kP + +T +
F25B5.6a 167 FKFLTLLAFRIFVKLNVQVMILEVGIGGEYDCTNVVEKPKVCGVTTL 213
geDHLDyhggdtlenyaaaKaelfknptegdglvlngdavlnaddekgvk
++DH+ ++g + l ++a Ka++fk ++ ++ + ++a+ + ++ k
F25B5.6a 214 DYDHMSILG-NKLSEIAWHKAGIFKESVPAFYSPTTTEAEEVLIARAISK 262
aaaragsarvdyysdadlrakdiqqdgsgaqsftlkgpgkgvlpevelpL
+ + + v+ y +++++++++
F25B5.6a 263 HVPLFQTPPVSAY---------------------------QFARDISPGI 285
pGheHNvlNALAAiAaAll<-*
G +H+ +N+++A+ ++++
F25B5.6a 286 RG-AHQFSNVSMALQLVRA 303
Mur_ligase_C: domain 1 of 1, from 339 to 367: score 29.4, E = 6.8e-07
*->vprgRlEvvgenngvtvidDSYAHnPdaiea<-*
+p gR ++v++ ++vt++ D +AH+P ++ea
F25B5.6a 339 WP-GRSQIVSTDRNVTYLLD-GAHTPKSMEA 367