Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F25D7.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F25D7.1 CE09629 status:Confirmed TR:Q93561 protein_id:CAB01696.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DER1 Der1-like family 351.5 9.3e-102 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DER1 1/1 10 202 .. 1 230 [] 351.5 9.3e-102
Alignments of top-scoring domains:
DER1: domain 1 of 1, from 10 to 202: score 351.5, E = 9.3e-102
*->iPpVTRayttacvlttilvrlelisPlqLylnpeLvfkKfQiWRLlT
iP+VTR++++a++++++l+r+++i++++++l+++Lv++KfQ+WR+lT
F25D7.1 10 IPIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLT 56
sflyfPvsggtgfkflfnlfFlyrYssmLEegsFrgrmvtaDFlymLiFg
+++y+Pv+++tgf++l++++Fly+Ys++LE++++rgr +aD+l+mLiF+
F25D7.1 57 ALIYYPVTPQTGFHWLMMCYFLYNYSKALESETYRGR--SADYLFMLIFN 104
avlltilglIsgminenivnfvdikkeqyyfLgqgLvfmivYvWSrkNpd
++++ +l++ ++di yfL +++v++++YvW++ N+d
F25D7.1 105 WFFCSGLCM-----------ALDI-----YFLLEPMVISVLYVWCQVNKD 138
vqinFfglirfkAkYLPwvLlgfsfllgnlsllvvdliGiivGHlYyFla
++++F++++rf+A+YLPwvL+gf+ +l++ + ++l+Gi+vGH+Y+F+a
F25D7.1 139 TIVSFWFGMRFPARYLPWVLWGFNAVLRG-GGT-NELVGILVGHAYFFVA 186
yfklnylrlfikrklkdvYPrdlgGkdllkTPy<-*
+YP+++ G dl++TP+
F25D7.1 187 ----------------LKYPDEY-GVDLISTPE 202