Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F25H2.10
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F25H2.10 CE09655 locus:rpa-0 deoxyribonuclease status:Confirmed SW:Q93572 protein_id:CAB02098.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ribosomal_L10 Ribosomal protein L10 175.3 2.1e-50 1
60s_ribosomal 60s Acidic ribosomal protein 66.7 1.8e-18 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_L10 1/1 5 107 .. 1 106 [] 175.3 2.1e-50
60s_ribosomal 1/1 231 311 .. 1 94 [] 66.7 1.8e-18
Alignments of top-scoring domains:
Ribosomal_L10: domain 1 of 1, from 5 to 107: score 175.3, E = 2.1e-50
*->mkaewKaeeVaeLselfkeyksvlIvdydGvpvaQLqelRkkLRgka
+++ wKa+++++L+elf+ey+++l+v++d+v+++Q+qe+R+++Rg+a
F25H2.10 5 DRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHA 51
vvlKvgKNTLirrAlkgageetpndelekledylkGptaiiftkedpfel
++l +gKNT+ir+Al+g+++++p+ lekl+++++ +++++ftked++e+
F25H2.10 52 EIL-MGKNTMIRKALRGHLGKNPS--LEKLLPHIVENVGFVFTKEDLGEI 98
akvledfkk<-*
+ l++++k
F25H2.10 99 RSKLLENRK 107
60s_ribosomal: domain 1 of 1, from 231 to 311: score 66.7, E = 1.8e-18
*->eitaadikailkaA..gvnvdavrvkllaaalegkdikeliangsak
++t a++++ l+++ +++ +a+ +++ +++ e +ik+ ia++s++
F25H2.10 231 YPTLASVAHSLANGlqNMLGVAAVTDVSFKEAE--TIKAFIADPSKF 275
gvavpaaaAaAaaaaAaaAAagAaaaaEEkKeEeeEeEEsDDDMGFGLF<
+ AaA+aaaAa+AAa+ aa++EE+Ke EsDDDMGFGLF
F25H2.10 276 A-------AAAPAAAAAPAAAAPAAKKEEPKE------ESDDDMGFGLF 311
-*
F25H2.10 - -