Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F25H9.6
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Query: F25H9.6 CE09663 Yeast hypothetical 65.2 KD protein like status:Partially_confirmed TR:P91988 protein_id:CAB02993.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Flavoprotein Flavoprotein 160.3 3.2e-44 1
Flavi_NS4A Flavivirus non-structural protein NS4A 3.6 2.8 1
DUF625 Protein of unknown function (DUF625) 2.8 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Flavoprotein 1/1 43 168 .. 1 141 [] 160.3 3.2e-44
DUF625 1/1 182 203 .. 75 97 .. 2.8 9.7
Flavi_NS4A 1/1 215 224 .. 140 149 .] 3.6 2.8
Alignments of top-scoring domains:
Flavoprotein: domain 1 of 1, from 43 to 168: score 160.3, E = 3.2e-44
*->kkIllgiTGaiaaikEavrLireLkeayyrdgaeVrvvlSkaA..kk
+++ll TG+ia++k a++Li+eL e+++rd++ ++vv +++A + +
F25H9.6 43 HNLLLILTGSIAVMK-APELISELYEKIGRDRILIKVVTTENAmkLC 88
fikpetlealsgnkvytdllfsiqkgtDlelatvtediedvvlhIalgsf
+i+++ + +++++ ++ ++ ++ +++d vlhI+l++
F25H9.6 89 HIQKLEFDEIVYEDRD--------------EWSMWRERGDKVLHIELRK- 123
waDlmliAPatanTlAKIAnGiaDNLltRaadvaLkerrPlvlaPa<-*
waD liAP+ anT+AKIAnG++DNL+t ++++a++ ++P+++aPa
F25H9.6 124 WADSALIAPLDANTMAKIANGLCDNLVT-SIIRAWDLSKPCYFAPA 168
DUF625: domain 1 of 1, from 182 to 203: score 2.8, E = 9.7
*->HReyLGkkkakFkEviPIkdpel<-*
HR+ L k + kFkE PI+ +++
F25H9.6 182 HRTVL-KSQLKFKEICPIQKELI 203
Flavi_NS4A: domain 1 of 1, from 215 to 224: score 3.6, E = 2.8
*->ilTlVgaVAA<-*
i+T+V++VAA
F25H9.6 215 IGTIVSLVAA 224