Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F26D12.1
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Query: F26D12.1 CE31688 status:Partially_confirmed TR:Q95ZU9 protein_id:AAK68685.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Fork_head Fork head domain 72.3 7.3e-18 2
Translin Translin family 4.1 2.6 1
TLE_N Groucho/TLE N-terminal Q-rich domain 4.0 2.4 1
DUF260 Protein of unknown function DUF260 1.2 6.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Translin 1/1 365 384 .. 205 224 .] 4.1 2.6
DUF260 1/1 371 400 .. 88 119 .] 1.2 6.2
Fork_head 1/2 563 608 .. 1 47 [. 57.6 6.2e-14
TLE_N 1/1 618 640 .. 32 54 .. 4.0 2.4
Fork_head 2/2 658 674 .. 48 64 .. 14.3 0.023
Alignments of top-scoring domains:
Translin: domain 1 of 1, from 365 to 384: score 4.1, E = 2.6
*->lrqsleKveedcyalkvrgl<-*
+r+ +eKve++ l+v ++
F26D12.1 365 MRNQIEKVESIEHKLSVERS 384
DUF260: domain 1 of 1, from 371 to 400: score 1.2, E = 6.2
*->qieslqaeLalvkselstyrgdpqd.qvpqesp<-*
++es+++ L++ +s+l++++ q+ +++++ +
F26D12.1 371 KVESIEHKLSVERSRLQGMM---QHlRMKPSPD 400
Fork_head: domain 1 of 2, from 563 to 608: score 57.6, E = 6.2e-14
*->KPPYSYiaLItmAIqqySpekrLtLseIYkfImdrFPYYRqnkqgWQ
PPY Y++LI +AI S + +LtL+eIY++ ++ F+Y+R n + W+
F26D12.1 563 RPPYTYASLIRQAIME-SSDCQLTLNEIYTWFTETFAYFRRNAATWK 608
<-*
F26D12.1 - -
TLE_N: domain 1 of 1, from 618 to 640: score 4.0, E = 2.4
*->KeEFqfLqaqYHslKlEceKLas<-*
K F fL +qY s K+ c K+a+
F26D12.1 618 KHLFSFLNSQYSSFKIMCPKIAK 640
Fork_head: domain 2 of 2, from 658 to 674: score 14.3, E = 0.023
*->NSIRHNLSLNkcFiKVp<-*
N +RHNLSL kcF+ V+
F26D12.1 658 NAVRHNLSLHKCFQRVE 674