hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F26E4.8
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Query:  F26E4.8  CE09692  locus:tba-1 TBA-2 tubulin alpha-2 chain status:Confirmed TR:O18688 protein_id:CAB03001.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
tubulin   Tubulin/FtsZ family, GTPase domain            373.4   3.5e-109   1
tubulin_C Tubulin/FtsZ family, C-terminal domain        265.9    5.2e-76   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
tubulin     1/1      47   244 ..     1   224 []   373.4 3.5e-109
tubulin_C   1/1     246   391 ..     1   151 []   265.9  5.2e-76

Alignments of top-scoring domains:
tubulin: domain 1 of 1, from 47 to 244: score 373.4, E = 3.5e-109
                   *->arIkVfgvgggggkhYvpRAVnrdlEpgveQegleGVefiainTdaq
                      +   +f++ +g+ ++YvpR++++dlEp+        V++ +i+T+++
     F26E4.8    47    FT--TFFSDTGN-GRYVPRSIFVDLEPT--------VVD-EIRTGTY 81

                   alksksLfapeniqiGkelgGtgnngAgGhpeiGeeaaeesldeIrkele
                   ++    Lf+pe++++Gke  +++nn+A+Gh+++G+e+++ +ld+Ir++++
     F26E4.8    82 KK----LFHPEQMITGKE--DAANNYARGHYTVGKELIDTVLDRIRRLAD 125

                   gcdsLdgffithsmGGGTGsGagpvlaeiakeegpptKkilaltvgVvps
                   +c +L+gff++hs+GGGTGsG++++l+e+++++++  Kk++++++ ++p+
     F26E4.8   126 NCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYG--KKSKLEFS-IYPA 172

                   PfvessEgvvrpyNAelglheLlehsDtlividNeaLldicdknlkikda
                   P+v  s+ vv+pyN++l++h++lehsD+ +++dNea++dic++nl+++++
     F26E4.8   173 PQV--STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLSVDRP 220

                   frvasdlmNdllaqvvsgITdslrfPG<-*
                   +  +++l N++++qvvs+IT+slrf+G
     F26E4.8   221 S--YTNL-NRIISQVVSSITASLRFDG    244

tubulin_C: domain 1 of 1, from 246 to 391: score 265.9, E = 5.2e-76
                   *->lNvDladvrtnLvPfPRlHFammGyaPlsg.....hralsVleltrq
                      lNvDl++++tnLvP+PR+HF++ +y+Pl++ ++  h+alsV ++t++
     F26E4.8   246    LNVDLNEFQTNLVPYPRIHFPLAAYTPLISadkayHEALSVNDITNS 292

                   afdspnlmvavdprhkkGaygalanitgrgdvtlkEvneaierireknsd
                   +f++ n+mv++dprh  G+y+a+++ ++rgdv++k+vn+ai+ i++k++
     F26E4.8   293 CFEPANQMVKCDPRH--GKYMAVCL-LYRGDVVPKDVNTAIAAIKTKRT- 338

                   aqFVeWapiifktaiddeppygvrvsvdLAkv.vsgvmtGNtTaksasge
                   +qFV+W+p++fk++i+++pp++v+++ dLAkv+++++m++NtTa
     F26E4.8   339 IQFVDWCPTGFKVGINYQPPTVVPGG-DLAKVpRAVCMLSNTTA------ 381

                   Iqelfkrile<-*
                   I+e+++r++
     F26E4.8   382 IAEAWSRLDY    391

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