hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F26E4.6
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Query:  F26E4.6  CE30519   cytochrome C oxidase status:Confirmed TR:O18687 protein_id:CAB02999.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
COX7C    Cytochrome c oxidase subunit VIIc              194.5    9.4e-59   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
COX7C      1/1       1    82 [.     1    83 []   194.5  9.4e-59

Alignments of top-scoring domains:
COX7C: domain 1 of 1, from 1 to 82: score 194.5, E = 9.4e-59
                   *->MLsqqviRsatraVRfShsesaPiivkrsvqgknsvvedGWAsARiP
                      MLs+qviR++++aVR++hs+++P++v++++qg+n++v+dGWAsAR+P
     F26E4.6     1    MLSRQVIRPIVQAVRKGHSSHSPSAVTYTGQGPNTFVNDGWASARLP 47

                   FkvtnKwrptAlatlGffaiGFaaPFivVryQLrKk<-*
                   F+vtnKw+++A+a++ f+aiGF+aPFivV+yQLrK+
     F26E4.6    48 FHVTNKWGFAAKAVT-FLAIGFWAPFIVVEYQLRKA    82

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