Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F26H11.3b
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Query: F26H11.3b CE15910 Bromodomain status:Confirmed TR:O45407 protein_id:CAB04195.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
bromodomain Bromodomain 125.3 4.9e-35 1
PHD PHD-finger 97.9 1.7e-30 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PHD 1/2 217 266 .. 1 51 [] 48.7 1.4e-14
PHD 2/2 277 326 .. 1 51 [] 57.3 2.4e-17
bromodomain 1/1 350 438 .. 1 92 [] 125.3 4.9e-35
Alignments of top-scoring domains:
PHD: domain 1 of 2, from 217 to 266: score 48.7, E = 1.4e-14
*->yCsvCgkvdddaggdllqCDgCdrwfHlaClgpple.eppegkWlCp
C C+k +d a+++++qC+ C rw+H++C+g+ +++ ++W C+
F26H11.3b 217 HC-TCQKIFD-ASKLYIQCELCARWYHGDCVGVAEQtILGLEHWSCE 261
eCtpk<-*
eC+++
F26H11.3b 262 ECIEE 266
PHD: domain 2 of 2, from 277 to 326: score 57.3, E = 2.4e-17
*->yCsvCgkvdddaggdllqCDgCdrwfHlaClgpple.eppegkWlCp
yC vC+k++dd +++++CD+C wfH++C+g + ++++ ++ Cp
F26H11.3b 277 YC-VCQKPYDD-TKFYVGCDSCQGWFHPECVGTTRAeAEQAADYNCP 321
eCtpk<-*
Ct++
F26H11.3b 322 ACTRE 326
bromodomain: domain 1 of 1, from 350 to 438: score 125.3, E = 4.9e-35
*->lnklllkvleeldeqgpralpflfpVlpsklelPDYYeiIkkPMDLk
++++ ++l+el+ ++ + pf+ pV+ + e+PDY ++IkkPMDL+
F26H11.3b 350 ADYTHVFELLELLLEHRMSTPFRNPVDLN--EFPDYEKFIKKPMDLS 394
TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
TI kk++ +Y l +Fv+D+n+mf NAktYN+++ v+k+A++
F26H11.3b 395 TITKKVERTEY-LYLSQFVNDVNQMFENAKTYNPKGNAVFKCAET 438