hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F27C1.3
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Query:  F27C1.3  CE28825    status:Partially_confirmed TR:P91282 protein_id:AAB37653.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF236   Protein of unknown function                    215.5    7.7e-61   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF236     1/1     103   255 ..     1   163 []   215.5  7.7e-61

Alignments of top-scoring domains:
DUF236: domain 1 of 1, from 103 to 255: score 215.5, E = 7.7e-61
                   *->KPgmAgthDPnYqtLAGlnndavFgkkdGaapaAGGGGPakpadvk.
                      + ++A thDPnYqtLAGln + vF++k G   + GGG  +k++d k+
     F27C1.3   103    RAAIADTHDPNYQTLAGLNDN-VFEQKQG---GGGGGAAPKAPDGKp 145

                   gkAAthDPnYqtLAGLnnnvfdKkdGgaapaaapgGPkaPaaqg..AKAa
                   g+A thDPnYqtLAGLn nvfdKk+G      +++GP+aPaa g++  Aa
     F27C1.3   146 GMAGTHDPNYQTLAGLNDNVFDKKGG------GGAGPQAPAAGGkpGMAA 189

                   thDPnYqtLAGLnnndvFdKkdGGGaggaapaaaGGdkkPlqpadknkKA
                   thDPnYqtLAGLnnn vFd+k G G+gg+     G   +P +pa+ ++KA
     F27C1.3   190 THDPNYQTLAGLNNN-VFDQKGGVGGGGG--GGNGAPAPPKAPAQHGAKA 236

                   AtlDPnYqtLAavggDvFG<-*
                   At+DPnYqtLA++++DvFG
     F27C1.3   237 ATHDPNYQTLAGLNQDVFG    255

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