hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F27C1.6
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Query:  F27C1.6  CE09718    status:Partially_confirmed TR:P91280 protein_id:AAB37651.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Utp14         Utp14 protein                            1018.4   1.6e-302   1
RecO          Recombination protein O                    10.1      0.058   1
Sybindin      Sybindin-like family                        4.2        4.9   1
Rhabdo_glycop Rhabdovirus spike glycoprotein              2.2          5   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
RecO            1/1     220   271 ..   216   276 .]    10.1    0.058
Sybindin        1/1     438   453 ..   205   220 .]     4.2      4.9
Rhabdo_glycop   1/1     525   542 ..   483   500 ..     2.2        5
Utp14           1/1       1   643 [.     1   795 []  1018.4 1.6e-302

Alignments of top-scoring domains:
RecO: domain 1 of 1, from 220 to 271: score 10.1, E = 0.058
                   *->AkefsdlsalgqPALPDPaaelkietraeLkqlldskleelsrverl
                      +kef dl+a+      DP a+   ++ + L+   ++  ++  +   +
     F27C1.6   220    LKEFDDLVAR------DPSAAHEKLAEMDLQRIMERGSLKHRG---Q 257

                   relsksfaparall<-*
                    +++k+ ++++a+
     F27C1.6   258 NQKFKQMLEKHASR    271

Sybindin: domain 1 of 1, from 438 to 453: score 4.2, E = 4.9
                   *->rcELFdekLdqyvrsi<-*
                      r+E Fdek +++v+s+
     F27C1.6   438    RAETFDEKVEKAVDSA    453

Rhabdo_glycop: domain 1 of 1, from 525 to 542: score 2.2, E = 5
                   *->knpvdlvdlwlsnWgfwl<-*
                      k++v +vdl l +Wg+w+
     F27C1.6   525    KEKVKDVDLNLAGWGSWV    542

Utp14: domain 1 of 1, from 1 to 643: score 1018.4, E = 1.6e-302
                   *->eSdDeedESdseeeEedsdDdaHqklLqaitsldtvkkikeskrskr
                      +SdD+++           dD+aHqklLq+i++++tvkk++++k+sk+
     F27C1.6     1    MSDDSDL-----------DDVAHQKLLQSIHTPGTVKKNRLKKASKT 36

                   .kktesykesefnssrdtdsakealglkdlldplkTskklsqlkkklnrk
                   +++++s+++++++s+++t++ak++lg+++l++++kT+kk+++++++++++
     F27C1.6    37 kTDATSLLSHLTVSRPSTNKAKQSLGIGGLESTEKTGKKRKSEATADETT 86

                   tikgkksveeiPLpkpeaekrieRkvAyelvkkeltskWdplVkqnRerL
                   t+k++ks+++iPL+++ea+k+ie+k+A++++kke+t++W++lV++nR+
     F27C1.6    87 TKKKLKSKTLIPLKDVEARKEIEGKIAFTDLKKEVTQNWTELVQSNRV-- 134

                   ERqAAYEqtknDLEkWkPivADnRkAdqlIFPLnketvgvstvenARPLn
                                            +dqlIFPL+k++++++++e
     F27C1.6   135 -------------------------SDQLIFPLTKPDGIMWGDE------ 153

                   taiaSqfkprTEleekmaqvLqdaelentekllkakelellkassltlEe
                                              +te++l++ke+el+ka++  +++
     F27C1.6   154 ---------------------------KTEPVLTEKEMELMKATD--IKM 174

                   akkRrkelarMReLmfreEaKaRriKKIKSKtYHKikKkeKmKealkefe
                   ak+R+++++rMR++++++EaK+R++KKIKSK+YH+i+K+eK+K++lkef+
     F27C1.6   175 AKDRLSQMQRMRAIVGIQEAKNRYMKKIKSKGYHRILKREKRKQLLKEFD 224

                   sLqkvdPeaAeEeleklEkaRvkERMtLKHKNtgkWAKrmlerGLakrdd
                   +L+++dP+aA+E+l++++++R++ER++LKH+++++++K+mle++ a+r++
     F27C1.6   225 DLVARDPSAAHEKLAEMDLQRIMERGSLKHRGQNQKFKQMLEKH-ASRNP 273

                   etRkalsEqLrkgreLkqKmqvtnedseedekveeevselsDvdneskei
                   e++k+l+E+Lr+greLk+K+++t+eds+++++     ++++D++n++k+i
     F27C1.6   274 EVKKLLDEHLRMGRELKAKVATTAEDSDGEAP-----TSTEDPQNKKKSI 318

                   vdteekklkngetedvkeagtmslpekarelkkenvraleaverkeEqee
                   +++++++++++e+e++k++gt++++++++++++++v++++++++k    +
     F27C1.6   319 HELIKDAAQEAEKESRKQVGTALVDTFLEDSDAQKVTLAQMRAKK----R 364

                   ieelekdgeeknskksrevkgrrvfgagsekEdkkeskqksdkrldnsvs
                   +e+++++++++n+++sre+++++v+++++ekEd+k++kqk++k+l++++s
     F27C1.6   365 QEAAITRSISANTGASRENPLFDVDDTWQEKEDAKKAKQKKKKLLKAKES 414

                   edndleksednkksgqgkvasvareesaieeaeplegklqkpaqktqsak
                        ++     k+++gkv++v++++++++ea+++e++++k++++++sa+
     F27C1.6   415 -----AR-----KGTIGKVSYVDKNYDPKMEAKRAETFDEKVEKAVDSAG 454

                   aLaaekskknkeidepklskqasktevnispdvdgvkAmnknekaelkkk
                   ++aaek++k++eid++k++++++++++++s+d++
     F27C1.6   455 VHAAEKRQKEIEIDPSKFLELNTNDLTQVSSDFV---------------- 488

                   kkkkekskdsesllttkeasqrvdgvptiddedleekedeeeaeqaelIa
                                                      ek+d++++e+a++I+
     F27C1.6   489 -----------------------------------EKMDQFDEEAAQVIN 503

                   eAFaGDDVvadFekdKeevveqEkpkpEvDltLPGWGsWaGvQkKaGvgp
                   eAF++DDV++dFe++Ke+v+e+Ek+k +vDl+L+GWGsW+G        p
     F27C1.6   504 EAFKDDDVIGDFEDMKEGVKEKEKVK-DVDLNLAGWGSWVG--------P 544

                   kmvkkKrkqklikkadpkkRkDknlknVIInEKvnkKAGiaKlqvsslPF
                   +m++kKr+q++++ka++k+R+D+++++VII+E++++K+Gi+K+q++slPF
     F27C1.6   545 GMTEKKRRQNFVIKAKEKRRRDGERNGVIIAENMTAKDGIGKIQPRSLPF 594

                   PFtsreqYErSlrmPiGpEWnpetafqkLtrPrVVtKaGqvIkPiKaee<
                   P++++e+YE++l++P+G+EWn+e+++++L++P+VV++aG++I+Pi++++
     F27C1.6   595 PYSRVEDYEAVLKQPLGLEWNMEKMRDELCKPAVVVEAGRAIRPINKKH  643

                   -*

     F27C1.6     -    -

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