Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F27D4.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F27D4.1 CE24926 electron transfer flavoprotein alpha-subunit status:Confirmed SW:Q93615 protein_id:CAB01967.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ETF_alpha Electron transfer flavoprotein alpha subuni 508.9 3.7e-149 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ETF_alpha 1/1 19 295 .. 1 297 [] 508.9 3.7e-149
Alignments of top-scoring domains:
ETF_alpha: domain 1 of 1, from 19 to 295: score 508.9, E = 3.7e-149
*->dyksVwVfaEhregeLrpVsselsgeartaAdkLGvevtavViGspa
+++s++V+aEh+e +L ++++++a+taA kLG+ev+++V+G++a
F27D4.1 19 RLNSTLVVAEHDETKL----APITLNAITAASKLGNEVSVLVTGANA 61
enaeaqaaalivyGadkVlvaedplldhylpEpyakvladLakqhkPeiv
+++a+++a+ v+G+++Vlva+d++l+++lpE++a+v+++ +kq++++++
F27D4.1 62 -TKVAEQVAK-VNGVKRVLVAQDEKLKNNLPERVAPVILASQKQFNFTAI 109
llgATalGkdLaPRlAArLdvglvsDvtaVdvddgnrsltatRpiYgGnl
+g +a+G++++PR+AA+Ldv +sDvt+V+++ + +tR++Y+Gn+
F27D4.1 110 TAGSSAFGRGVIPRVAAKLDVSSISDVTEVHSA-----DSFTRTLYAGNA 154
ivtvkskdkppkvlTvRpgvFeaaesegsgagvietvdakipesdlritk
+++vks++ p+k+lT+R+++Fe+a+ eg++++v+++ +a+i ++dl+ ++
F27D4.1 155 VKKVKSTA-PIKLLTFRGTSFEPAK-EGGSGAVENAPSADI-KTDLS-EF 200
vleivkkdtsdrpDLteAkiVVsGGRGlgskENFeklleeLAdvLGAaVG
++++++k s+rpDL++Ak+VVsGGRGl+s++NF+ l+++LAd+LGA+VG
F27D4.1 201 LGQELSK--SERPDLATAKVVVSGGRGLKSGDNFK-LIYDLADKLGAGVG 247
ASRaaVDaGkWmpndrQVGQTGKvVaPCkLYIAvGISGAIQHlAGMkdSk
ASRaaVDaG ++pnd+QVGQTGK+VaP +LYIA+GISGAIQHlAGMkdSk
F27D4.1 248 ASRAAVDAG-YVPNDMQVGQTGKIVAP-ELYIAIGISGAIQHLAGMKDSK 295
<-*
F27D4.1 - -