Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F28C6.3
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Query: F28C6.3 CE03274 cleavage stimulation factor like status:Partially_confirmed TR:Q19864 protein_id:CAA92670.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 129.9 3.6e-35 6
toxin_3 long chain scorpion toxin 5.1 2.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/6 99 137 .. 1 39 [] 27.8 4.1e-06
WD40 2/6 160 198 .. 1 39 [] 35.4 2.8e-08
WD40 3/6 205 242 .. 1 39 [] 11.1 0.23
WD40 4/6 258 287 .. 9 39 .] 24.1 4.7e-05
WD40 5/6 293 331 .. 1 39 [] 19.4 0.001
toxin_3 1/1 327 337 .. 58 69 .] 5.1 2.5
WD40 6/6 392 422 .. 8 39 .] 16.9 0.0052
Alignments of top-scoring domains:
WD40: domain 1 of 6, from 99 to 137: score 27.8, E = 4.1e-06
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ l+ H++p+++ af+ d g+++a+gS+D++ik+ d
F28C6.3 99 EYETIYLtVHKAPCRAAAFNSD-GSLVATGSADCSIKIMD 137
WD40: domain 2 of 6, from 160 to 198: score 35.4, E = 2.8e-08
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+++tl++H + v+ v f+p ++l+sgS D+t+kl+d
F28C6.3 160 HPVIRTLyDHVDDVNTVIFHPR-DSILISGSNDKTVKLFD 198
WD40: domain 3 of 6, from 205 to 242: score 11.1, E = 0.23
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ +tl+ pv++++++p g++l+ + + t++l++
F28C6.3 205 KKAMKTLsEV-YPVRALSCHPG-GEFLLVATDHPTVRLYN 242
WD40: domain 4 of 6, from 258 to 287: score 24.1, E = 4.7e-05
*->HtspvtcvafspdsgpylasgSrDgtiklWd<-*
Ht +vt+v +s + ++ +++S Dg +k+Wd
F28C6.3 258 HTESVTDVHYSEN-ARLYVTASKDGHVKIWD 287
WD40: domain 5 of 6, from 293 to 331: score 19.4, E = 0.001
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ + + s++++ +f + g+y+++++ D +klW+
F28C6.3 293 CVETFKRaHDGSSICSAKFTKN-GKYILTSGMDSIVKLWE 331
toxin_3: domain 1 of 1, from 327 to 337: score 5.1, E = 2.5
*->vkiwesetgkkC<-*
vk+we++t++ C
F28C6.3 327 VKLWELSTNR-C 337
WD40: domain 6 of 6, from 392 to 422: score 16.9, E = 0.0052
*->gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
gHts+++ sp+ +p + +gS+D+ + W
F28C6.3 392 GHTSACRTFVHSPS-MPAFMTGSDDHRARFWY 422