hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F28D9.1
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Query:  F28D9.1  CE30346  locus:rsr-1  status:Partially_confirmed TR:O62185 protein_id:CAB04214.3

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
PWI      PWI domain                                     158.3    1.3e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PWI        1/1      45   118 ..     1    84 []   158.3  1.3e-47

Alignments of top-scoring domains:
PWI: domain 1 of 1, from 45 to 118: score 158.3, E = 1.3e-47
                   *->ldrIkPWItKrVteiLGfEDdtvvefIlsqiKqsKEKKDGEekknln
                      +d+IkPWIt+rV++iLG+EDd+vve+Ilsqi          ++knln
     F28D9.1    45    MDVIKPWITARVNDILGMEDDVVVEYILSQI----------DDKNLN 81

                   skmLkiNltgfildeeAeeFVgkLWeLLIeeeksreg<-*
                   +k+L+iN+tgf+++++A+eFVg+LW+LLIe+++s++g
     F28D9.1    82 PKLLQINVTGFLNARRAREFVGDLWNLLIEANASEDG    118

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