hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F28H6.4
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Query:  F28H6.4  CE23688    status:Partially_confirmed TR:Q9U3H5 protein_id:CAA20934.2

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
SPK            Domain of unknown function (DUF545)       34.3    2.5e-08   3
CAP            CAP protein                                4.0        1.9   1
DUF58          Protein of unknown function DUF58          3.3        8.9   1
Phosphoprotein Vesiculovirus phosphoprotein               2.0        2.8   1
THF_DHG_CYH    Tetrahydrofolate dehydrogenase/cyclohy     1.1        9.6   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
SPK              1/3     105   159 ..    28    83 ..     0.8       71
SPK              2/3     243   277 ..    30    60 ..    12.1    0.045
SPK              3/3     384   461 ..    13    95 ..    25.3  8.8e-06
DUF58            1/1     546   560 ..     1    15 [.     3.3      8.9
Phosphoprotein   1/1     570   596 ..     1    28 [.     2.0      2.8
THF_DHG_CYH      1/1     801   817 ..     1    17 [.     1.1      9.6
CAP              1/1     796   819 ..   143   166 ..     4.0      1.9

Alignments of top-scoring domains:
SPK: domain 1 of 3, from 105 to 159: score 0.8, E = 71
                   *->tkvfeeFselegsglsestyykRFhrkLAPnmaklnnYSiEeRvRlM
                      ++v+e+++e  g+ + + +y++++ ++   +++++    +Ee+v l
     F28H6.4   105    NEVWEKCREVVGDHRDVIAYRNHY-NFFSKKLHEFRFLTLEEKVDLY 150

                   FaLsgkVed<-*
                   +a+ ++V++
     F28H6.4   151 YAMDIRVDK    159

SPK: domain 2 of 3, from 243 to 277: score 12.1, E = 0.045
                   *->vfeeFselegsglse....styykRFhrkLAPnma<-*
                      v+eeF+++  s ++++++++ty+ RF r L+Pn++
     F28H6.4   243    VWEEFRRRYASTSNIkrspETYRGRFLRILVPNLH    277

SPK: domain 3 of 3, from 384 to 461: score 25.3, E = 8.8e-06
                   *->kTKdavevkkPlpvatkvfeeFselegsglsestyykRFhrkLAPnm
                      kT ++ e    + + + +++eF      +++++ + ++F ++L++n+
     F28H6.4   384    KTQRIKE---KM-TGWIFWQEFLDVVHTKRTWKSLSQHFVENLMENI 426

                   aklnnYSiEeRvRlMFaLsgkVeddFLerietiGtV<-*
                      ++Y++ +++ l +aL+ ++++d L+ +++i+tV
     F28H6.4   427 MG-TKYDLKAKMELYYALRCPIDEDVLKKFQEIATV    461

DUF58: domain 1 of 1, from 546 to 560: score 3.3, E = 8.9
                   *->vkRGeyelgKVrvrs<-*
                      ++RG+y+  K+++rs
     F28H6.4   546    RPRGYYKMKKLPARS    560

Phosphoprotein: domain 1 of 1, from 570 to 596: score 2.0, E = 2.8
                   *->srlreylkaykNlddalQdideseErrE<-*
                      ++l++++    Nld al d d+s E +E
     F28H6.4   570    DELSAIYTHERNLD-ALRDEDDSDEHLE    596

THF_DHG_CYH: domain 1 of 1, from 801 to 817: score 1.1, E = 9.6
                   *->mgAqiidGkalAqeira<-*
                      ++ +i +Gk++A++i++
     F28H6.4   801    SQNIINSGKPIAEQIEK    817

CAP: domain 1 of 1, from 796 to 819: score 4.0, E = 1.9
                   *->kPdqnSqtLlelLKPIseeiaevg<-*
                      kP++nSq    + KPI e+i +v+
     F28H6.4   796    KPSMNSQNIINSGKPIAEQIEKVQ    819

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