Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F29B9.6
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Query: F29B9.6 CE09784 locus:ubc-9 ubiquitin-conjugating enzyme status:Confirmed TR:Q95017 protein_id:AAK67232.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UQ_con Ubiquitin-conjugating enzyme 224.9 1.2e-63 1
CBM_19 Carbohydrate binding domain (family 19) 5.6 4.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CBM_19 1/1 88 98 .. 51 61 .] 5.6 4.8
UQ_con 1/1 2 154 .. 1 181 [] 224.9 1.2e-63
Alignments of top-scoring domains:
CBM_19: domain 1 of 1, from 88 to 98: score 5.6, E = 4.8
*->PsGvvClssad<-*
PsG+vCls d
F29B9.6 88 PSGTVCLSLLD 98
UQ_con: domain 1 of 1, from 2 to 154: score 224.9, E = 1.2e-63
*->ssaatkRLqkElkelqkdppdpkpgisaspvddrddednlfeWeatl
s++a RL++E k ++k d++ g+ a+pv+++d++ nlf+We+
F29B9.6 2 SGIAAGRLAEERKHWRK---DHPFGFIAKPVKNADGTLNLFNWECA- 44
iiGPpgTpYegGvFkldieFPedYPfkPPkvrfvtpgevkFlTkiyHPNv
i+G ++T++egG++++++ F +d+P PPk+ kF+++ +HPNv
F29B9.6 45 IPGRKDTIWEGGLYRIRMLFKDDFPSTPPKC--------KFEPPLFHPNV 86
dsenGeiCLsILkdpgDDPgYelhperWsPaltlrsvLllsiqsLLsePn
+ ++G++CLs L ++ +W+P++++++ L+ +iq LL++Pn
F29B9.6 87 Y-PSGTVCLSLLDEN----------KDWKPSISIKQLLI-GIQDLLNHPN 124
pesPlnaeaGAklykknrGereefekkvrarvek<-*
+e+P++aea +++y++n r+e+ek+v++++ k
F29B9.6 125 IEDPAQAEA-YQIYCQN---RAEYEKRVKKEAVK 154