Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F29B9.6
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Query:  F29B9.6  CE09784  locus:ubc-9 ubiquitin-conjugating enzyme status:Confirmed TR:Q95017 protein_id:AAK67232.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
UQ_con   Ubiquitin-conjugating enzyme                   224.9    1.2e-63   1
CBM_19   Carbohydrate binding domain (family 19)          5.6        4.8   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CBM_19     1/1      88    98 ..    51    61 .]     5.6      4.8
UQ_con     1/1       2   154 ..     1   181 []   224.9  1.2e-63

Alignments of top-scoring domains:
CBM_19: domain 1 of 1, from 88 to 98: score 5.6, E = 4.8
                   *->PsGvvClssad<-*
                      PsG+vCls  d
     F29B9.6    88    PSGTVCLSLLD    98

UQ_con: domain 1 of 1, from 2 to 154: score 224.9, E = 1.2e-63
                   *->ssaatkRLqkElkelqkdppdpkpgisaspvddrddednlfeWeatl
                      s++a  RL++E k ++k   d++ g+ a+pv+++d++ nlf+We+
     F29B9.6     2    SGIAAGRLAEERKHWRK---DHPFGFIAKPVKNADGTLNLFNWECA- 44

                   iiGPpgTpYegGvFkldieFPedYPfkPPkvrfvtpgevkFlTkiyHPNv
                   i+G ++T++egG++++++ F +d+P  PPk+        kF+++ +HPNv
     F29B9.6    45 IPGRKDTIWEGGLYRIRMLFKDDFPSTPPKC--------KFEPPLFHPNV 86

                   dsenGeiCLsILkdpgDDPgYelhperWsPaltlrsvLllsiqsLLsePn
                   + ++G++CLs L ++           +W+P++++++ L+ +iq LL++Pn
     F29B9.6    87 Y-PSGTVCLSLLDEN----------KDWKPSISIKQLLI-GIQDLLNHPN 124

                   pesPlnaeaGAklykknrGereefekkvrarvek<-*
                   +e+P++aea +++y++n   r+e+ek+v++++ k
     F29B9.6   125 IEDPAQAEA-YQIYCQN---RAEYEKRVKKEAVK    154



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