Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F29B9.2a
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Query: F29B9.2a CE09781 status:Confirmed TR:Q9GYI0 protein_id:AAK29799.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
jmjC jmjC domain 49.5 4e-13 1
PHD PHD-finger 14.4 0.0018 2
MOBP Myelin-associated oligodendrocytic basic pro 5.4 0.98 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MOBP 1/1 138 155 .. 1 18 [. 5.4 0.98
PHD 1/2 254 272 .. 16 34 .. 13.9 0.0027
PHD 2/2 280 290 .. 41 51 .] 7.1 0.42
jmjC 1/1 495 595 .. 1 126 [] 49.5 4e-13
Alignments of top-scoring domains:
MOBP: domain 1 of 1, from 138 to 155: score 5.4, E = 0.98
*->msqKvAKEGPRLsKnqKf<-*
ms K+ E P++ nq +
F29B9.2a 138 MSNKMEAEAPKMESNQNY 155
PHD: domain 1 of 2, from 254 to 272: score 13.9, E = 0.0027
*->llqCDgCdrwfHlaClgpp<-*
+++CD+C w+H C g++
F29B9.2a 254 WIGCDSCQTWYHFLCSGLE 272
PHD: domain 2 of 2, from 280 to 290: score 7.1, E = 0.42
*->gkWlCpeCtpk<-*
+k++Cp+C+p+
F29B9.2a 280 EKFFCPKCVPH 290
jmjC: domain 1 of 1, from 495 to 595: score 49.5, E = 4e-13
*->wlylGmpfsttpwHiedqglySinylhfgapkvWyiiPpeyaekfek
++++Gm +s+t++H++ g++ + y+++ ++k i++ + +++ +
F29B9.2a 495 FCLAGMAGSYTDFHVDFGGSS-VYYHILKGEK---IFYIAAPTEQN- 536
lhkflskhgpapdleggeqpdldlrhlltlisPkvlpLlenGipvyrfvQ
++++ ++ pd ++ ++ + v r+v
F29B9.2a 537 --FAAYQA-------HETSPDT-TTWFGDIANGAV----------KRVVI 566
kpGEfVftfPGayHqVfNlGfniaeavNF<-*
k G+++ +++G++H+V++ +++ + NF
F29B9.2a 567 KEGQTLLIPAGWIHAVLTPVDSLVFGGNF 595