Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F29D10.4
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Query: F29D10.4 CE05763 locus:hum-1 myosin status:Partially_confirmed TR:Q19901 protein_id:CAB00095.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
myosin_head Myosin head (motor domain) 1092.8 0 1
SH3 SH3 domain 65.2 2.9e-16 1
UPF0042 Uncharacterised P-loop ATPase protein fa 14.5 0.0031 1
IQ IQ calmodulin-binding motif 7.9 2.8 1
Replicase Replicase family 4.1 5.4 1
Shikimate_DH Shikimate / quinate 5-dehydrogenase 3.7 6.6 1
RNA_helicase RNA helicase 3.3 7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Shikimate_DH 1/1 67 78 .. 251 262 .. 3.7 6.6
UPF0042 1/1 101 118 .. 1 19 [. 14.5 0.0031
RNA_helicase 1/1 102 125 .. 125 148 .. 3.3 7
myosin_head 1/1 16 677 .. 1 734 [] 1092.8 0
IQ 1/1 697 714 .. 4 21 .] 7.9 2.8
Replicase 1/1 736 760 .. 237 261 .] 4.1 5.4
SH3 1/1 1047 1100 .] 1 57 [. 65.2 2.9e-16
Alignments of top-scoring domains:
Shikimate_DH: domain 1 of 1, from 67 to 78: score 3.7, E = 6.6
*->gMLveQgaeqFe<-*
+ML++Qga+q+e
F29D10.4 67 EMLLYQGAAQYE 78
UPF0042: domain 1 of 1, from 101 to 118: score 14.5, E = 0.0031
*->ielvivtGrSGAGKsVAlr<-*
+ vi++G SGAGK+V ++
F29D10.4 101 -QCVIISGESGAGKTVNAK 118
RNA_helicase: domain 1 of 1, from 102 to 125: score 3.3, E = 7
*->vvylhGaPGqGKSllanvlarals<-*
+v++ G +G GK++ a +++ +s
F29D10.4 102 CVIISGESGAGKTVNAKFIMNYIS 125
myosin_head: domain 1 of 1, from 16 to 677: score 1092.8, E = 0
*->vEDmveLtyLnEpsvlhNLKkRYksdlIYTYsGlvLvsvNPYkrLpq
v+Dmv+L++L+E+s+ +NLKkR + I TY+G+vL+svNP+k+ p
F29D10.4 16 VDDMVLLPKLTEQSIVENLKKRLQANSIFTYIGPVLISVNPFKQMP- 61
iYteeiiakYrGKrryElPPHiFAiADeAYRsMlsdkeNQsilISGESGA
+te+ + Y G +yE++PHi+A+AD++YR+Ml d+e+Q+++ISGESGA
F29D10.4 62 YFTEKEMLLYQGAAQYENAPHIYALADNMYRNMLIDNESQCVIISGESGA 111
GKTEntKkvmqYlAaVsggnsgngeevpsvkvgrvEdqILqsNPiLEAFG
GKT+n+K +m Y+ +sgg + + v ++d+ILqsNP+LEAFG
F29D10.4 112 GKTVNAKFIMNYISRISGGGQ-K--------VQHIKDVILQSNPLLEAFG 152
NAKTtRNNNSSRFGKyieIqFdktGkivGakIenYLLEKSRVvyQtegER
N T+RN NSSRFGKy eI F +G+++G+k +n LLEKSRVv+Q+eg R
F29D10.4 153 NSATVRNWNSSRFGKYVEIVFSRGGEPIGGKLSNFLLEKSRVVHQNEGDR 202
NFHIFYQLLaGasqqnlkkeLkLtndpedYhYLnqggevkpcytvdGiDD
NFH+FYQL+aGa+ l+ +++ + +Y+YLn +g + d+ DD
F29D10.4 203 NFHVFYQLCAGADKN-LRSTFGIG-ELQYYNYLNMSG----VFKADDTDD 246
segnveeFketrkAmdilGftdeeqrsIFrivAaILhlGNikFkqrrkee
+eF t+ Am+++G +d++q++++rivA +Lh+GNi F ++++ +
F29D10.4 247 G----KEFESTLHAMKVVGVNDQDQLEVLRIVATVLHIGNITFTEENNFA 292
aaipddnnadtkalekaaeLlGvdatelekALlsrriktGtegrkStvtk
a++ d le a+LlG+ +++ e L+ r+++ + ++ k +
F29D10.4 293 AVSGKD------YLEYPAFLLGLTSADIEAKLTGRKMESKWGTQKEEIDM 336
pqnveQAsyARDALAKalYsRLFdWIVnrINktLdfkakegqdasfIGVL
+nveQAsy RDA Ka+Y+RLFd++V+++N ++ ++ + d++ G+L
F29D10.4 337 KLNVEQASYTRDAWVKAIYARLFDYLVKKVNDAMNITSQSTSDNFSVGIL 386
DIyGFEIFekNSFEQLCINYvNEKLQQfFNhhmFklEQEEYkrEGIeWtf
DIyGFEIF++N+FEQ+CIN+vNEKLQQ+F+++++k+EQEEY+rEGI+Wt+
F29D10.4 387 DIYGFEIFNNNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTE 436
IdFgdNLQpcIDLIEkKsPpGILsLLDEeClfPkaqS.GtDqtFldKLys
Id++dN ++++DLIE+K+PpGI+sLLD+ C ++q +G D +l L +
F29D10.4 437 IDYFDN-KIVCDLIETKRPPGIMSLLDDTCAQNHGQReGVDRQLLTTLSK 485
tfskhpahfekfsPrfrqkksgahFiikHYAGdVeYnvegFleKNKDpLf
+f +hp hf ++ s F+ikHYAGdV+Ynv+gF++ N+D L+
F29D10.4 486 SFAGHP-HFG------PGSDS---FVIKHYAGDVTYNVDGFCDRNRDVLY 525
ddlisllksSsnpllaeLFpdeetlagpfeadpsslskkrksgskNkstg
+dli l+++Ss p+++ LFp + ++s +
F29D10.4 526 PDLILLMQKSSRPFIQALFP-----------ENVAASAGK---------- 554
kktkksnfiTvGaqfKeslneLMktLsstnLPHFvRCIkPNekKkagvfD
+++T + +++++ n+L++ L +++ PH+vRCIkPNe K++++++
F29D10.4 555 ------RPTTFSTKIRTQANTLVESLMKCS-PHYVRCIKPNETKRPNDWE 597
aslVlhQLrclGVLEgiRIrRaGFPnRitfdeFlqRYriLapktwPkwsg
+s+V+hQ+ +lG+ E+iR+rRaGF++R +fd+F qRY+i++p+twP + g
F29D10.4 598 ESRVKHQVEYLGLRENIRVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQG 647
dakkgeknEIvaceklLqsLnlDkgeeyrfGkTKIFFR<-*
d + ace + +s ++k ++y++GkTKIF +
F29D10.4 648 DQQR-------ACEIICDSVHMEK-NQYQMGKTKIFVK 677
IQ: domain 1 of 1, from 697 to 714: score 7.9, E = 2.8
*->aikIQaawRGylaRkryk<-*
a +IQ+awR + aRk++
F29D10.4 697 ARVIQKAWRQFSARKQHI 714
Replicase: domain 1 of 1, from 736 to 760: score 4.1, E = 5.4
*->chRgdgqlvyeatlpeiQaarGRkg<-*
++ ++g+++ ++ p+ Q+ G++
F29D10.4 736 NRNFVGDYIGLEHHPTLQSLVGKRQ 760
SH3: domain 1 of 1, from 1047 to 1100: score 65.2, E = 2.9e-16
*->pkvvALYDYeaeesdELsFkkGDvitvleksddgWWkgrlkgtgGke
p+v+A Y+Yea++ dELsF+ G++i++ +k+ +gWW g+++ +++
F29D10.4 1047 PVVIAVYPYEAQDVDELSFEAGAEIELMNKDASGWWQGKVN---NRV 1090
GlvPsNYVep<-*
Gl+P NYV +
F29D10.4 1091 GLFPGNYVKE 1100