Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F29G6.1
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Query:  F29G6.1  CE18653   kazal-type proteinase inhibitor status:Partially_confirmed TR:Q95011 protein_id:CAB01753.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
kazal        Kazal-type serine protease inhibitor dom   247.7    1.6e-70  15
EGF          EGF-like domain                              6.8        3.3   1
Herpes_teg_N Herpesvirus tegument protein, N-terminal     6.1        1.2   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
kazal          1/15     21    60 ..    17    61 .]    35.7  2.2e-07
kazal          2/15     61   110 ..     1    61 []    24.6  0.00015
kazal          3/15    115   133 ..     1    30 [.     9.9     0.94
EGF            1/1     110   138 ..     1    45 []     6.8      3.3
kazal          4/15    244   293 ..     1    61 []    30.8    4e-06
kazal          5/15    363   397 ..     1    51 [.    15.5    0.034
kazal          6/15    524   572 ..     1    61 []    11.4     0.37
kazal          7/15    578   621 ..     1    61 []    33.2  9.9e-07
kazal          8/15    679   730 ..     1    61 []    16.9    0.014
kazal          9/15    760   805 ..     1    61 []    34.1  5.5e-07
Herpes_teg_N   1/1     823   832 ..     1    11 [.     6.1      1.2
kazal         10/15    806   854 ..     1    61 []    22.6  0.00051
kazal         11/15    860   910 ..     1    61 []    37.3  8.6e-08
kazal         12/15    911   961 ..     1    61 []    32.5  1.5e-06
kazal         13/15    962  1008 ..     1    61 []    12.0     0.26
kazal         14/15   1022  1059 ..    24    61 .]    15.4    0.036
kazal         15/15   1060  1111 ..     1    61 []    21.9  0.00077

Alignments of top-scoring domains:
kazal: domain 1 of 15, from 21 to 60: score 35.7, E = 2.2e-07
                   *->CpreydPVCGsDGvTYsNECeLkkaaCaenveqgtniekkhdGpC<-
                      Cp   +PVCG+D+vTY+N C L   +C  +++ + ++ + ++G C
     F29G6.1    21    CPSVIRPVCGTDNVTYNNLCFL---RC--VQRTNEDLLFFYNGTC   60

                   *

     F29G6.1     -   -

kazal: domain 2 of 15, from 61 to 110: score 24.6, E = 0.00015
                   *->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv
                      C++ +           C +  +P+C + G T  N+C++ + +C  ++
     F29G6.1    61    CDKKE-----------CEKVGTPICDNFGETHINDCHFAQFQCIMKK 96

                   eqgtniekkhdGpC<-*
                     g +++k h+G+C
     F29G6.1    97 SMGLSLTKLHMGRC    110

kazal: domain 3 of 15, from 115 to 133: score 9.9, E = 0.94
                   *->CsrypnptskDGklvaCp.reydPVCGsDGv<-*
                      C++             C++ e+dPVC ++G+
     F29G6.1   115    CNHN------------CTnTEFDPVCDTNGF    133

EGF: domain 1 of 1, from 110 to 138: score 6.8, E = 3.3
                   *->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
                      C++   C++   C+nt+        ++ C+ ++G     ++ +rC
     F29G6.1   110    CSSK-DCNH--NCTNTEF-------DPVCD-TNG-----FQMRRC   138

                   *

     F29G6.1     -   -

kazal: domain 4 of 15, from 244 to 293: score 30.8, E = 4e-06
                   *->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv
                      Cs  +           C +++dPVC + ++T  N C++k  aC  n+
     F29G6.1   244    CSIKE-----------CDKSWDPVCDTRNRTHKNVCQFKFFACKINK 279

                   eqgtniekkhdGpC<-*
                     g  i ++h+G+C
     F29G6.1   280 IDGSVIDIAHSGAC    293

kazal: domain 5 of 15, from 363 to 397: score 15.5, E = 0.034
                   *->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv
                      C+r+            C+r+ +PVC   ++T  N C++++  C
     F29G6.1   363    CPRT------------CSRDVKPVCDEANNTHQNLCHFQQYNC---- 393

                   eqgt<-*
                   + ++
     F29G6.1   394 NMRK    397

kazal: domain 6 of 15, from 524 to 572: score 11.4, E = 0.37
                   *->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv
                      C++++           Cp + +PVC s G+  +N Ce+   +C   +
     F29G6.1   524    CPKPN-----------CPTDGQPVCDSAGNLHGNLCEFTYSRC--IA 557

                   .eqgtniekkhdGpC<-*
                     +g++i+++    C
     F29G6.1   558 aSKGHQIHIATEENC    572

kazal: domain 7 of 15, from 578 to 621: score 33.2, E = 9.9e-07
                   *->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv
                      C+ +            C+ +  P+C+sD  TY N C+++k +C
     F29G6.1   578    CQMP------------CTDDKHPICASDFSTYENLCQFRKQKC---- 608

                   eqgtniekkhdGpC<-*
                       ++e+   G+C
     F29G6.1   609 -LDSELEVLFKGKC    621

kazal: domain 8 of 15, from 679 to 730: score 16.9, E = 0.014
                   *->CsrypnptskDGklvaCp.reydPVCGsDGvTYsNECeLkkaaCaen
                      C+  ++          C +   dPVC   G T   ECeL+   C ++
     F29G6.1   679    CPPVES----------CDtEKPDPVCTDSGATFLTECELNIENCKLK 715

                   veqgtniekkhdGpC<-*
                   +  + ++ ++++G C
     F29G6.1   716 KLDQPKLVVVSQGIC    730

kazal: domain 9 of 15, from 760 to 805: score 34.1, E = 5.5e-07
                   *->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv
                      Cs              C  +ydP+CG++GvT  N C+L+k  C
     F29G6.1   760    CSME------------CDNSYDPLCGTNGVTFTNACSLQKEIC---- 790

                   eq.gtniekkhdGpC<-*
                   e+ + +ie+++ G C
     F29G6.1   791 ESaNSTIEVAYTGMC    805

	[output cut off at A = 10 top alignments]


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