Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F29G6.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F29G6.1 CE18653 kazal-type proteinase inhibitor status:Partially_confirmed TR:Q95011 protein_id:CAB01753.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
kazal Kazal-type serine protease inhibitor dom 247.7 1.6e-70 15
EGF EGF-like domain 6.8 3.3 1
Herpes_teg_N Herpesvirus tegument protein, N-terminal 6.1 1.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
kazal 1/15 21 60 .. 17 61 .] 35.7 2.2e-07
kazal 2/15 61 110 .. 1 61 [] 24.6 0.00015
kazal 3/15 115 133 .. 1 30 [. 9.9 0.94
EGF 1/1 110 138 .. 1 45 [] 6.8 3.3
kazal 4/15 244 293 .. 1 61 [] 30.8 4e-06
kazal 5/15 363 397 .. 1 51 [. 15.5 0.034
kazal 6/15 524 572 .. 1 61 [] 11.4 0.37
kazal 7/15 578 621 .. 1 61 [] 33.2 9.9e-07
kazal 8/15 679 730 .. 1 61 [] 16.9 0.014
kazal 9/15 760 805 .. 1 61 [] 34.1 5.5e-07
Herpes_teg_N 1/1 823 832 .. 1 11 [. 6.1 1.2
kazal 10/15 806 854 .. 1 61 [] 22.6 0.00051
kazal 11/15 860 910 .. 1 61 [] 37.3 8.6e-08
kazal 12/15 911 961 .. 1 61 [] 32.5 1.5e-06
kazal 13/15 962 1008 .. 1 61 [] 12.0 0.26
kazal 14/15 1022 1059 .. 24 61 .] 15.4 0.036
kazal 15/15 1060 1111 .. 1 61 [] 21.9 0.00077
Alignments of top-scoring domains:
kazal: domain 1 of 15, from 21 to 60: score 35.7, E = 2.2e-07
*->CpreydPVCGsDGvTYsNECeLkkaaCaenveqgtniekkhdGpC<-
Cp +PVCG+D+vTY+N C L +C +++ + ++ + ++G C
F29G6.1 21 CPSVIRPVCGTDNVTYNNLCFL---RC--VQRTNEDLLFFYNGTC 60
*
F29G6.1 - -
kazal: domain 2 of 15, from 61 to 110: score 24.6, E = 0.00015
*->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv
C++ + C + +P+C + G T N+C++ + +C ++
F29G6.1 61 CDKKE-----------CEKVGTPICDNFGETHINDCHFAQFQCIMKK 96
eqgtniekkhdGpC<-*
g +++k h+G+C
F29G6.1 97 SMGLSLTKLHMGRC 110
kazal: domain 3 of 15, from 115 to 133: score 9.9, E = 0.94
*->CsrypnptskDGklvaCp.reydPVCGsDGv<-*
C++ C++ e+dPVC ++G+
F29G6.1 115 CNHN------------CTnTEFDPVCDTNGF 133
EGF: domain 1 of 1, from 110 to 138: score 6.8, E = 3.3
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C++ C++ C+nt+ ++ C+ ++G ++ +rC
F29G6.1 110 CSSK-DCNH--NCTNTEF-------DPVCD-TNG-----FQMRRC 138
*
F29G6.1 - -
kazal: domain 4 of 15, from 244 to 293: score 30.8, E = 4e-06
*->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv
Cs + C +++dPVC + ++T N C++k aC n+
F29G6.1 244 CSIKE-----------CDKSWDPVCDTRNRTHKNVCQFKFFACKINK 279
eqgtniekkhdGpC<-*
g i ++h+G+C
F29G6.1 280 IDGSVIDIAHSGAC 293
kazal: domain 5 of 15, from 363 to 397: score 15.5, E = 0.034
*->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv
C+r+ C+r+ +PVC ++T N C++++ C
F29G6.1 363 CPRT------------CSRDVKPVCDEANNTHQNLCHFQQYNC---- 393
eqgt<-*
+ ++
F29G6.1 394 NMRK 397
kazal: domain 6 of 15, from 524 to 572: score 11.4, E = 0.37
*->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv
C++++ Cp + +PVC s G+ +N Ce+ +C +
F29G6.1 524 CPKPN-----------CPTDGQPVCDSAGNLHGNLCEFTYSRC--IA 557
.eqgtniekkhdGpC<-*
+g++i+++ C
F29G6.1 558 aSKGHQIHIATEENC 572
kazal: domain 7 of 15, from 578 to 621: score 33.2, E = 9.9e-07
*->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv
C+ + C+ + P+C+sD TY N C+++k +C
F29G6.1 578 CQMP------------CTDDKHPICASDFSTYENLCQFRKQKC---- 608
eqgtniekkhdGpC<-*
++e+ G+C
F29G6.1 609 -LDSELEVLFKGKC 621
kazal: domain 8 of 15, from 679 to 730: score 16.9, E = 0.014
*->CsrypnptskDGklvaCp.reydPVCGsDGvTYsNECeLkkaaCaen
C+ ++ C + dPVC G T ECeL+ C ++
F29G6.1 679 CPPVES----------CDtEKPDPVCTDSGATFLTECELNIENCKLK 715
veqgtniekkhdGpC<-*
+ + ++ ++++G C
F29G6.1 716 KLDQPKLVVVSQGIC 730
kazal: domain 9 of 15, from 760 to 805: score 34.1, E = 5.5e-07
*->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv
Cs C +ydP+CG++GvT N C+L+k C
F29G6.1 760 CSME------------CDNSYDPLCGTNGVTFTNACSLQKEIC---- 790
eq.gtniekkhdGpC<-*
e+ + +ie+++ G C
F29G6.1 791 ESaNSTIEVAYTGMC 805
[output cut off at A = 10 top alignments]