Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F30B5.7
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Query:  F30B5.7  CE28225    status:Partially_confirmed TR:Q19913 protein_id:AAA83498.2

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Zip             ZIP Zinc transporter                    181.1    1.8e-50   2
Glucan_synthase 1,3-beta-glucan synthase component        0.2        7.1   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Zip               1/2       5   317 ..     1   363 []   187.1  2.7e-52
Glucan_synthase   1/1     269   330 ..   780   841 .]     0.2      7.1
Zip               2/2     321   347 ..   123   149 ..   -16.2  5.9e+04

Alignments of top-scoring domains:
Zip: domain 1 of 2, from 5 to 317: score 187.1, E = 2.7e-52
                   *->lllkiyaifalllisligvllplllplmksavatttes.dlraskkl
                        l  +++fa+++++++ ++ pl++ +  +        +++  ++
     F30B5.7     5    TVLQYILAFAMFVVTAAIGIVPLFIVRVMK-------RsQNESEQGY 44

                   lsfllaFAaGvlLgtaflHLLPealealeslclehtpwhdfpfhpdssna
                   ls+l++FA+Gv+L+t+fl+++P+  e+ e+l +    + +f        +
     F30B5.7    45 LSYLTCFAGGVFLATCFLDIIPHINEGYEELMETYDLNWHFAY------P 88

                   glivllGfllfllvEklvtllkerkgghghshdhehshte..........
                    ++ ++Gf++++++E+++t++++  ++ gh+h+h+ + + + +++++++
     F30B5.7    89 QFVTCCGFFFIYFIEEFTTFVFGNGQQPGHGHSHSLNKGNkitttsdgrl 138

                   .........eerhhkkssseeaseehgsseapeessekekesdsqelelh
                   +++ ++++++++++ + ++eeas    s e +
     F30B5.7   139 spgmpkerkGSVNITNLRMEEASTWVVSDEKSN----------------- 171

                   eqsghseeleessaehsdhketrviayllllglilHnffdGLAiGasfss
                                          + ++ + +++++H++ +G+A+G++ s
     F30B5.7   172 ----------------------ILKSLTFAVAMSFHSLLEGFALGVQDSK 199

                   stslgistflAvlfHelphglGlgaiLlqagfsrkkAvfPWllnlllfAl
                   +   + ++f+ +l+H+ ++++++g+++ +a+  + k v   l  +l ++l
     F30B5.7   200 GR--IYALFFSLLLHKGVEAFSVGLQISMANSNKVKTV---LATILIYSL 244

                   tapiGialGllissgasygasggadiasgillafsAGtFlYvAlvellPe
                   +ap+G + G  + ++   +   ++d a  +l++++AGtF+Yv++ e+++
     F30B5.7   245 MAPLGSIMGSILQNS---ETNIYKDCAILLLESLAAGTFIYVTFIEIMAS 291

                   elassksnssgqsdlklsllqllalllGfalMllia<-*
                   e  ++            +l+qll++++Gfal   ++
     F30B5.7   292 EKSNDFN----------HLKQLLWIIIGFALVTTMQ    317

Glucan_synthase: domain 1 of 1, from 269 to 330: score 0.2, E = 7.1
                   *->iilplilvaltliaylFinsqtgsttnailrlliitlipiivnlvll
                      i+l   l+a+t+i ++Fi++ + +++n ++ l  +  i i ++lv
     F30B5.7   269    ILLLESLAAGTFIYVTFIEIMASEKSNDFNHLKQLLWIIIGFALVTT 315

                   itlflmscsigplls<-*
                   +++f      g +
     F30B5.7   316 MQVFFGHEHGGEHAH    330

Zip: domain 2 of 2, from 321 to 347: score -16.2, E = 5.9e+04
                   *->ghghshdhehshteeerhhkkssseea<-*
                      gh+h++ h h+++e+ +++++++++++
     F30B5.7   321    GHEHGGEHAHGGAEGNGTEHGHQHHHH    347



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