Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F30B5.7
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Query: F30B5.7 CE28225 status:Partially_confirmed TR:Q19913 protein_id:AAA83498.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Zip ZIP Zinc transporter 181.1 1.8e-50 2
Glucan_synthase 1,3-beta-glucan synthase component 0.2 7.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Zip 1/2 5 317 .. 1 363 [] 187.1 2.7e-52
Glucan_synthase 1/1 269 330 .. 780 841 .] 0.2 7.1
Zip 2/2 321 347 .. 123 149 .. -16.2 5.9e+04
Alignments of top-scoring domains:
Zip: domain 1 of 2, from 5 to 317: score 187.1, E = 2.7e-52
*->lllkiyaifalllisligvllplllplmksavatttes.dlraskkl
l +++fa+++++++ ++ pl++ + + +++ ++
F30B5.7 5 TVLQYILAFAMFVVTAAIGIVPLFIVRVMK-------RsQNESEQGY 44
lsfllaFAaGvlLgtaflHLLPealealeslclehtpwhdfpfhpdssna
ls+l++FA+Gv+L+t+fl+++P+ e+ e+l + + +f +
F30B5.7 45 LSYLTCFAGGVFLATCFLDIIPHINEGYEELMETYDLNWHFAY------P 88
glivllGfllfllvEklvtllkerkgghghshdhehshte..........
++ ++Gf++++++E+++t++++ ++ gh+h+h+ + + + +++++++
F30B5.7 89 QFVTCCGFFFIYFIEEFTTFVFGNGQQPGHGHSHSLNKGNkitttsdgrl 138
.........eerhhkkssseeaseehgsseapeessekekesdsqelelh
+++ ++++++++++ + ++eeas s e +
F30B5.7 139 spgmpkerkGSVNITNLRMEEASTWVVSDEKSN----------------- 171
eqsghseeleessaehsdhketrviayllllglilHnffdGLAiGasfss
+ ++ + +++++H++ +G+A+G++ s
F30B5.7 172 ----------------------ILKSLTFAVAMSFHSLLEGFALGVQDSK 199
stslgistflAvlfHelphglGlgaiLlqagfsrkkAvfPWllnlllfAl
+ + ++f+ +l+H+ ++++++g+++ +a+ + k v l +l ++l
F30B5.7 200 GR--IYALFFSLLLHKGVEAFSVGLQISMANSNKVKTV---LATILIYSL 244
tapiGialGllissgasygasggadiasgillafsAGtFlYvAlvellPe
+ap+G + G + ++ + ++d a +l++++AGtF+Yv++ e+++
F30B5.7 245 MAPLGSIMGSILQNS---ETNIYKDCAILLLESLAAGTFIYVTFIEIMAS 291
elassksnssgqsdlklsllqllalllGfalMllia<-*
e ++ +l+qll++++Gfal ++
F30B5.7 292 EKSNDFN----------HLKQLLWIIIGFALVTTMQ 317
Glucan_synthase: domain 1 of 1, from 269 to 330: score 0.2, E = 7.1
*->iilplilvaltliaylFinsqtgsttnailrlliitlipiivnlvll
i+l l+a+t+i ++Fi++ + +++n ++ l + i i ++lv
F30B5.7 269 ILLLESLAAGTFIYVTFIEIMASEKSNDFNHLKQLLWIIIGFALVTT 315
itlflmscsigplls<-*
+++f g +
F30B5.7 316 MQVFFGHEHGGEHAH 330
Zip: domain 2 of 2, from 321 to 347: score -16.2, E = 5.9e+04
*->ghghshdhehshteeerhhkkssseea<-*
gh+h++ h h+++e+ +++++++++++
F30B5.7 321 GHEHGGEHAHGGAEGNGTEHGHQHHHH 347