Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F30F8.8
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Query: F30F8.8 CE09819 locus:taf-5 guanine nucleotide-binding protein status:Partially_confirmed TR:O01985 protein_id:CAB05603.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TFIID_WDA WD40 associated region in TFIID subunit 228.4 1.1e-64 1
WD40 WD domain, G-beta repeat 111.7 5.4e-30 5
death Death domain 5.9 2.6 1
ShTK ShTK domain 5.3 4.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TFIID_WDA 1/1 61 203 .. 1 148 [. 228.4 1.1e-64
death 1/1 243 276 .. 1 33 [. 5.9 2.6
WD40 1/5 384 422 .. 1 39 [] 37.5 7.2e-09
WD40 2/5 440 460 .. 18 39 .] 11.5 0.18
ShTK 1/1 478 490 .. 1 16 [. 5.3 4.6
WD40 3/5 464 502 .. 1 39 [] 38.6 3.6e-09
WD40 4/5 506 544 .. 1 39 [] 29.8 1.1e-06
WD40 5/5 564 587 .. 15 39 .] 2.7 56
Alignments of top-scoring domains:
TFIID_WDA: domain 1 of 1, from 61 to 203: score 228.4, E = 1.1e-64
*->seaGesvrvsadneendpeaYevayklLrdwiedsLdiYKaELsqLL
+eaG+++rv+++n+++++ea++v++++++++++d++d+++aE+sqLL
F30F8.8 61 REAGPVLRVEGSNGLPPEEAISVEFDTFVQHANDCTDVVQAEFSQLL 107
YPiFVhsYLnLvakdhpekAksFferFkGmidlddlhiedirqLsslskp
+PiF+hsY++L++k+ +++A++Ff+rFk i+++++++e+++qLs+++++
F30F8.8 108 FPIFAHSYIALIEKH-AATARIFFNRFK--IFIPECFSEFVYQLSLIEDA 154
ehikeNetallfrenKyrirlSrdtfnlLlrfLqenennggskIislhnq
+++++Ne+++++renK+++rlSr+t+++L++++++ ++g+++Ii++h++
F30F8.8 155 MTLRANEHVHILRENKFLVRLSRPTLKHLESIQTR--VIGVKNIIAKHIC 202
h<-*
+
F30F8.8 203 I 203
death: domain 1 of 1, from 243 to 276: score 5.9, E = 2.6
*->relekllddp.dlgrdWkrLArkLglseeeIdqi<-*
+el++++++++ g+dWk ++k++ + + d+i
F30F8.8 243 DELMQNIEKRkTKGKDWKDMGKKMQTHCPQADRI 276
WD40: domain 1 of 5, from 384 to 422: score 37.5, E = 7.2e-09
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ ++gH +pv +v fspd +++l+s+ D+t++lW+
F30F8.8 384 STTSVRYtGHGGPVFSVNFSPD-RRLLISSAGDRTVRLWS 422
WD40: domain 2 of 5, from 440 to 460: score 11.5, E = 0.18
*->fspdsgpylasgSrDgtiklWd<-*
f+ g y+a++S+D+t +W+
F30F8.8 440 FCSR-GYYFATASADKTAAMWS 460
ShTK: domain 1 of 1, from 478 to 490: score 5.3, E = 4.6
*->tCvDyvDpasdCaawa<-*
+C D++++C ++a
F30F8.8 478 GCI---DYHPNCNYIA 490
WD40: domain 3 of 5, from 464 to 502: score 38.6, E = 3.6e-09
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+l+++ + + v c++++p+ ++y+a gS+D+ +++Wd
F30F8.8 464 MHPLRIFaDPYGDVGCIDYHPN-CNYIAGGSDDRYVRVWD 502
WD40: domain 4 of 5, from 506 to 544: score 29.8, E = 1.1e-06
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
g+ +++++gH++++ +v+fsp g+y++s + g++ +Wd
F30F8.8 506 GTRVRIFsGHKASIIAVKFSPC-GRYIVSLDAIGNLMIWD 544
WD40: domain 5 of 5, from 564 to 587: score 2.7, E = 56
*->cvafspdsgpylasgSrDgtiklWd<-*
++ fs d g ++a + + +i l++
F30F8.8 564 SITFSRD-GGVFAVSHGNSSIQLYS 587