Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F31F7.2
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F31F7.2 CE29303 status:Partially_confirmed TR:O01545 protein_id:AAB52325.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
vwa von Willebrand factor type A domain 112.8 1.8e-34 1
Herpes_TAF50 Herpesvirus transcription activation fac 2.6 5.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Herpes_TAF50 1/1 410 427 .. 574 591 .] 2.6 5.3
vwa 1/1 484 654 .. 1 172 [. 112.8 1.8e-34
Alignments of top-scoring domains:
Herpes_TAF50: domain 1 of 1, from 410 to 427: score 2.6, E = 5.3
*->sprrqlsfeesvaeianP<-*
spr++ + e++v++i++P
F31F7.2 410 SPRTPRDVEIQVTPIPSP 427
vwa: domain 1 of 1, from 484 to 654: score 112.8, E = 1.8e-34
*->DivFllDgSgSigeenrFekvkdfvkklveknldigpdgtrvglvqy
D++Fl+D+S+Sig n F+ +k+f+ ++++ di p + r++++qy
F31F7.2 484 DLMFLVDTSSSIGINN-FDIQKNFICEILK-DVDIAPGRSRIAMIQY 528
ssdvrtefsLndytskddllaailknlrylgGgTnNtgkALkyalenlfs
s d+ ++f +++y+s++++ + + ++l y gG T+ + kAL +a + +
F31F7.2 529 SQDPSVVFGFDQYYSYESVRRGV-MRLSYTGGATM-LSKALAFAGGIMYH 576
stM.l.k.n.graagsRp.enapkvlillTDGksndgpdve.aaaalrrk
+ ++l+k++++++ p+ ++ +vl l++DG+s+d+ ++++++l +
F31F7.2 577 E-QnLkKtTkKHQYLPTPkHDRLQVLCLVSDGYSDDN--ADkESVNLHDH 623
.giivfavGv.dadeeeLr.iasepeseghvfyv<-*
+ +fav + +++ L +i+ +g vf+v
F31F7.2 624 lHVKIFAVVTrSFNKDKLApIT--R-FDGSVFTV 654