Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F32A11.2
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Query: F32A11.2 CE17738 locus:hpr-17 status:Confirmed TR:O62196 protein_id:CAB04224.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Rad17 Rad17 cell cycle checkpoint protein 853.4 7.6e-253 1
AAA ATPase family associated with various c 10.9 0.03 1
ATP-bind Conserved hypothetical ATP binding prot 8.3 0.19 1
Herpes_ICP4_C Herpesvirus ICP4-like protein C-termina 6.0 0.36 1
NB-ARC NB-ARC domain 5.9 0.83 1
GSPII_E Type II/IV secretion system protein 5.6 0.69 1
RNA_helicase RNA helicase 5.5 1.7 1
APS_kinase Adenylylsulfate kinase 4.9 2.4 1
DUF87 Domain of unknown function DUF87 3.5 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
APS_kinase 1/1 48 61 .. 1 17 [. 4.9 2.4
ATP-bind 1/1 48 61 .. 1 14 [. 8.3 0.19
GSPII_E 1/1 47 62 .. 150 165 .. 5.6 0.69
NB-ARC 1/1 40 62 .. 33 57 .. 5.9 0.83
RNA_helicase 1/1 48 66 .. 125 143 .. 5.5 1.7
AAA 1/1 48 69 .. 1 22 [. 10.9 0.03
DUF87 1/1 56 69 .. 177 190 .. 3.5 5.9
Herpes_ICP4_C 1/1 357 384 .. 424 451 .] 6.0 0.36
Rad17 1/1 1 451 [. 1 545 [] 853.4 7.6e-253
Alignments of top-scoring domains:
APS_kinase: domain 1 of 1, from 48 to 61: score 4.9, E = 2.4
*->rGctvWfTGLSGsGKST<-*
+ +TG+ GsGKST
F32A11.2 48 ---VMYLTGPAGSGKST 61
ATP-bind: domain 1 of 1, from 48 to 61: score 8.3, E = 0.19
*->ailViGpAGSGKST<-*
+ +GpAGSGKST
F32A11.2 48 VMYLTGPAGSGKST 61
GSPII_E: domain 1 of 1, from 47 to 62: score 5.6, E = 0.69
*->GliLVTGPTGSGKTtt<-*
G + +TGP GSGK+tt
F32A11.2 47 GVMYLTGPAGSGKSTT 62
NB-ARC: domain 1 of 1, from 40 to 62: score 5.9, E = 0.83
*->lemsadenlgvvgivGMGGvGKTTL<-*
+e++ ++lgv+ + G++G+GK+T+
F32A11.2 40 SESN--KQLGVMYLTGPAGSGKSTT 62
RNA_helicase: domain 1 of 1, from 48 to 66: score 5.5, E = 1.7
*->vvylhGaPGqGKSllanvl<-*
v yl+G++G GKS++ v+
F32A11.2 48 VMYLTGPAGSGKSTTVEVM 66
AAA: domain 1 of 1, from 48 to 69: score 10.9, E = 0.03
*->gvLLyGPPGtGKTlLAkavAke<-*
++L GP G+GK+++++ ++e
F32A11.2 48 VMYLTGPAGSGKSTTVEVMCTE 69
DUF87: domain 1 of 1, from 56 to 69: score 3.5, E = 5.9
*->GaGKSNtVaVlire<-*
G+GKS+tV V++ e
F32A11.2 56 GSGKSTTVEVMCTE 69
Herpes_ICP4_C: domain 1 of 1, from 357 to 384: score 6.0, E = 0.36
*->slaeamvAhpriPsvtWdsgfGgsaeTv<-*
sl e+ vA + +sv+W ++ ++T+
F32A11.2 357 SLPEDYVAQMATRSVMWNNYKEPRPGTL 384
Rad17: domain 1 of 1, from 1 to 451: score 853.4, E = 7.6e-253
*->lkedekelWvekfkPetaddLAVHkkKikeVkeWLkavflesqkkkk
+k++e++l++++++P+++d+L++H+kKi+eV++WLk+vf+es +k+
F32A11.2 1 MKAAEHDLLTIELAPRRRDELQIHNKKIAEVDHWLKNVFSES--NKQ 45
lriLLLtGPsGcGKSTtvkvLaKElgiqliEwiNPvslpevlneekktdf
l++++LtGP+G+GKSTtv+v+++E++i++iE++ pe+l+ ++df
F32A11.2 46 LGVMYLTGPAGSGKSTTVEVMCTEQNIEIIEYS-----PEYLH---NEDF 87
eteksvrmFPflSqlesFkeFLLrasrynsLqmsGkdlrlkKkLiLvedL
e+ek++ ++++++FLLr r++sL+++G lkK+L+Lv++L
F32A11.2 88 ECEKPD--------FTQLRRFLLR--RHGSLRGGG----LKKRLLLVTEL 123
PHnvfysDsekrFrevLreylaSSErgksPlifiiTesesnNLEgnnnqd
P +++ysD+ek Fre+L+e+l+ ++++P+if++T+s+++ +n+n+d
F32A11.2 124 P-DQAYSDAEK-FREDLSEVLQ---HIWHPVIFCLTNSIAC---WNLNPD 165
RlFGiDYTfkevqimnkelLqdPrikrisFNPIAsTiMkKaLkricsves
RlF +k+++imn +i++++FNP+A+++MkKaL+r+++++s
F32A11.2 166 RLF-----TKDFNIMN-------GIDTVTFNPVADSFMKKALVRASNCLS 203
kknkekkkvpskaevedicegaeGDiRsAinsLQlsssksesnLlPisek
+++s+a++++i+e+a+GD+R+A+n+LQ++s+++ +++
F32A11.2 204 -------SPLSDAKLNVIGEEAGGDLRIAMNMLQMNSIGP-------NAD 239
mstkslvvviskkgrgkdssleanqmierllgkdSeslllfkalkrvllp
++++++v+++sk++r++ a++mi+r+l+++ ++++++++++r++++
F32A11.2 240 RRSGNSVICASKANREE-----AFHMIGRILYAK-RVNPNVPKPSRFSKR 283
krnslnkGElsisdasSileklSerdtmlhePeevvemsreesdeflnfl
+r+s ++i+e+l +r++++h+P+++++ms+++s+++l+fl
F32A11.2 284 RRKS-----------APIPEPL-VRTELEHDPTDIITMSSMTSEKLLDFL 321
kQnylnffkeiddkvkvseelslcdvLkgDwrtRKslledysasvatRsv
+Qn+++f+++i+++++v+e++s+cd+L+gDw+tRKsl+edy+a++atRsv
F32A11.2 322 FQNEPIFCSNISKYRYVAETFSMCDFLTGDWTTRKSLPEDYVAQMATRSV 371
mlsnsyyaPLirkcqssGksyipvrkplresinkkpkeTklefSDimkvl
m++n +k++++G ++++v++plr+s++k++++Tkle+ ++l
F32A11.2 372 MWNN-------YKEPRPG-TLFAVGRPLRSSLEKHTARTKLEL----QRL 409
dlisavdalaldipylsvldeLiapmrvdsNtlsyleDikRLPvkrdf<-
++i+a+d++al++py+++++++i+p+r+++ +ls+++Di+ +++
F32A11.2 410 PMIGAKDYAALTCPYITIIKDIIDPQRIEY-FLSRPMDIN-----WQW 451
*
F32A11.2 - -