hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F32A5.1
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Query:  F32A5.1  CE28287   oxidoreductase status:Partially_confirmed TR:Q19953 protein_id:AAK68355.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
myb_DNA-binding Myb-like DNA-binding domain              39.8    2.2e-09   1
Ribosomal_L41   Ribosomal protein L41                     7.6        2.8   1
Anthrax_toxA    Anthrax toxin LF subunit                  4.7        3.3   1
Mov34           Mov34/MPN/PAD-1 family                    4.7        7.5   1
RasGAP_C        RasGAP C-terminus                         4.0        7.6   1
CheR            CheR methyltransferase, SAM binding d     3.2        6.9   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
CheR              1/1      76    96 ..   184   204 .]     3.2      6.9
myb_DNA-binding   1/1      77   125 ..     1    65 []    39.8  2.2e-09
Mov34             1/1     354   372 ..   102   120 .]     4.7      7.5
Ribosomal_L41     1/1     351   374 ..     1    25 []     7.6      2.8
RasGAP_C          1/1     384   399 ..   134   149 .]     4.0      7.6
Anthrax_toxA      1/1     542   550 ..    55    63 .]     4.7      3.3

Alignments of top-scoring domains:
CheR: domain 1 of 1, from 76 to 96: score 3.2, E = 6.9
                   *->EslpggltdlFelvkstvgiy<-*
                      E++++ + d Fel+k+ +++
     F32A5.1    76    EAMSWTHEDEFELLKAAHKFK    96

myb_DNA-binding: domain 1 of 1, from 77 to 125: score 39.8, E = 2.2e-09
                   *->rgrWteeEdellveavekhGkgfgIrlsltkanWkkIaekmgpgssn
                       ++Wt e++ +l++a +k+ +g          nW +Iae +g g
     F32A5.1    77    AMSWTHEDEFELLKAAHKFKMG----------NWGEIAESIGRG--- 110

                   nvlgrtaeqcklryykyk<-*
                      ++ +++ck+++ k++
     F32A5.1   111 ---RKDGHNCKDYFEKHF    125

Mov34: domain 1 of 1, from 354 to 372: score 4.7, E = 7.5
                   *->wlSevDvhtqelyqryipe<-*
                      w+S+ D + +e  +++++e
     F32A5.1   354    WVSKKDRRLHEFRKKMNQE    372

Ribosomal_L41: domain 1 of 1, from 351 to 374: score 7.6, E = 2.8
                   *->mrakwkkKRvRRLkRKRRKmRaRsK<-*
                       r  w  K+ RRL+  R+Km +  K
     F32A5.1   351    -RRMWVSKKDRRLHEFRKKMNQEVK    374

RasGAP_C: domain 1 of 1, from 384 to 399: score 4.0, E = 7.6
                   *->LhkkGVlleitgpqln<-*
                      Lh++GV++++t p+
     F32A5.1   384    LHESGVSKSETRPKMR    399

Anthrax_toxA: domain 1 of 1, from 542 to 550: score 4.7, E = 3.3
                   *->ipfdqkLsk<-*
                      i+++q+L+k
     F32A5.1   542    IEVLQDLQK    550

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