Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F33A8.1
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Query: F33A8.1 CE17753 locus:let-858 status:Confirmed TR:Q17336 protein_id:CAB04256.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MIF4G MIF4G domain 174.3 6.2e-50 2
MA3 MA3 domain 124.7 2.6e-36 1
SBP_bac_7 Bacterial extracellular solute-binding prot 2.8 8.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MIF4G 1/2 194 382 .. 1 230 [] 184.7 5.4e-53
SBP_bac_7 1/1 428 441 .. 285 298 .] 2.8 8.5
MA3 1/1 486 592 .. 1 117 [] 124.7 2.6e-36
MIF4G 2/2 673 856 .. 93 113 .. -29.3 5.9e+04
Alignments of top-scoring domains:
MIF4G: domain 1 of 2, from 194 to 382: score 184.7, E = 5.4e-53
*->ekkvkgllnkLsespenfekiikellkllmsdlrenDPennkellke
kk+ gl+n+++ + n+ +i++ell++++++ +++
F33A8.1 194 KKKIHGLVNRVN--AKNLVQIVRELLQENVIR-----------SKGL 227
lielifekaveepnfipayArLcalLnsknpkteFgklllnrlqeeFekr
l++ i++++ +p+f+++yA+L+a++nsk+p ++g+lll rl+ +F++
F33A8.1 228 LCRDIIQAQAFSPGFSNVYAALAAVINSKFP--HVGELLLRRLIVQFKR- 274
eleaeleeeeesdrrrrlglvrFlgELynfqvltekiileclkelledlt
+++++dr ++++++F+++L+n+qv +e + le++ ++le++t
F33A8.1 275 -------SFRRNDRGVTVNVIKFIAHLINQQVAHEVLALEIMILMLEEPT 317
eedlqdqvrdeeslecllslLetiGkdLensekspklmdellerlqdill
+ +s+e+++ +L+ +G++L e++p++++++ +rl++il
F33A8.1 318 D----------DSVEVAIAFLKECGAKLL--EIAPAALNSVYDRLRAILM 355
krdkkhvrvesepelssrirfmledlielrknk<-*
++++++ ++l++ri++m+e+++++rk+k
F33A8.1 356 ETERSE------NALDRRIQYMIETAMQIRKDK 382
SBP_bac_7: domain 1 of 1, from 428 to 441: score 2.8, E = 8.5
*->ealkpvykefekei<-*
e+ ++vy+e++kei
F33A8.1 428 EKNEEVYEEIRKEI 441
MA3: domain 1 of 1, from 486 to 592: score 124.7, E = 2.6e-36
*->lkkkielileEYlssGDtdEAvrclleLglpeefhhevvkklivlal
++++++l+++++l D++EA+++ll++++p++++ e++ +l+ ++
F33A8.1 486 FRREVYLTMQSSL---DYQEAAHKLLKMKIPDSMQNELCAMLVDCCA 529
eratvkktyremyskLLsrlcqegvistkqfekgFsrvlesleDlelDiP
+ +ty+++y++L++r+c ++ +++ fek + +++++++++++
F33A8.1 530 QQ----RTYERFYGMLIERFCRLRLEYQQYFEKLCQDTYSTIHRIDIT-- 573
davrnLaeFvarlisdgiLp<-*
++rnLa+++a+l+s+++++
F33A8.1 574 -KLRNLARLIAHLLSTDAID 592
MIF4G: domain 2 of 2, from 673 to 856: score -29.3, E = 5.9e+04
*->eFekr..........................................
e++++ ++ +++++ ++ + +++++++++++++++++++++++++
F33A8.1 673 ELREWlakglkkkkgmldqlkaesssdsssssdssdssdssdsddss 719
..................................................
++++++++++++++++++++++++++++++++++++ +++++++++ +++
F33A8.1 720 dsssdsssssesepeppkkkkkknseesskkkekenigrrdrgdkraerh 769
..................................................
++++ +++++++++++++++++++++++++++++++++++++++++++++
F33A8.1 770 rdqsvenkdkdrrrrqdsdenrrpergddrkdrskdrrrqdsddedrkgr 819
.....................eleaeleeeeesdrrr<-*
+++++++++++++++++++++++e+++e+ ++ ++ r
F33A8.1 820 erredsgerrrgdrdrrdrnkDQEDHREDRRDRSKDR 856