hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F33A8.3
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Query:  F33A8.3  CE17755   'Cold-shock' DNA-binding domain status:Confirmed TR:O62213 protein_id:CAB04257.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
CSD      'Cold-shock' DNA-binding domain                130.3    2.9e-35   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CSD        1/1      20    90 ..     1    71 []   130.3  2.9e-35

Alignments of top-scoring domains:
CSD: domain 1 of 1, from 20 to 90: score 130.3, E = 2.9e-35
                   *->ratGtVKWFNaeKGFGFItpedgseDVFVHfSaIqgdgp.k.frsLq
                      +++GtVKWFN+++G+GFI++ d++eD+FVH++aI +++p+k +rsL+
     F33A8.3    20    KVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPnKyLRSLG 66

                   eGqkVeFeivedgGqkGpqAanVtkl<-*
                   ++++V F+ive  G kG +Aa Vt++
     F33A8.3    67 DNEEVMFDIVE--GSKGLEAASVTGP    90

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