hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F33H1.1a
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Query:  F33H1.1a  CE17763  locus:daf-19 DNA binding transcription factor status:Confirmed SW:Q09555 protein_id:CAA88701.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
RFX_DNA_binding RFX DNA-binding domain                  195.8    2.2e-61   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
RFX_DNA_binding   1/1     218   299 ..     1    84 []   195.8  2.2e-61

Alignments of top-scoring domains:
RFX_DNA_binding: domain 1 of 1, from 218 to 299: score 195.8, E = 2.2e-61
                   *->ddaseqNresnrqvfPAtlqWLkenyEeqedvclPRsklYahYlkhC
                      dda+++N+++n++++PAt++WL+enyE++e+ +lPR++lY+hY+khC
    F33H1.1a   218    DDADSINLPNNQRASPATVNWLFENYEIGEG-SLPRCELYDHYKKHC 263

                   eslaClkPlnaASFGKLIRsvFpdLkTRRLGtRGqSK<-*
                   ++++ ++P+naASFGKLIRsvF++LkTRRLGtRG+SK
    F33H1.1a   264 AEHR-MDPVNAASFGKLIRSVFHNLKTRRLGTRGNSK    299

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