Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F35G12.3b
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Query: F35G12.3b CE00972 locus:sel-5 serine\/threonine kinase status:Confirmed TR:Q20056 protein_id:CAA86332.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 123.0 5.3e-33 1
Amb_V_allergen Amb V Allergen 5.0 3.6 1
RIO1 RIO1 family 3.1 6.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RIO1 1/1 60 79 .. 1 30 [. 3.1 6.2
pkinase 1/1 47 310 .. 1 287 [. 123.0 5.3e-33
Amb_V_allergen 1/1 325 334 .. 35 44 .] 5.0 3.6
Alignments of top-scoring domains:
RIO1: domain 1 of 1, from 60 to 79: score 3.1, E = 6.2
*->nVYhAvsyaedgekdshsvlvevAvKiyrt<-*
VY+A + +++k +A+K +t
F35G12.3b 60 IVYVASD--RKNNK--------FALKRQFT 79
pkinase: domain 1 of 1, from 47 to 310: score 123.0, E = 5.3e-33
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikek.rfl
++ +++ eG+f+ Vy a ++ ++ ++A+K +k ++k +
F35G12.3b 47 VTIEKQIAEGGFAIVYVASDR--KNNKFALKRQF-TKDNEKQLeACC 90
rEiqilkrLs.HpNIvrligvfed....tddhlylvmEymegGdLfdylr
rE + lk++ +H+NIv++ +++++ ++ +++l +Ey+ + ++++
F35G12.3b 91 REHSFLKQCIgHKNIVEFVDSYTNclgnGIWECMLLTEYHQK-NVLQLMN 139
rng...gplsekeakkialQilrGleYLHsng..ivHRDLKpeNILlden
++ +++ +l+ +e+++i+++++++++++H++ ++i+HRDLK eN+L++++
F35G12.3b 140 ERIsqnQYLTNDEILSIFTDLCEAVSFIHNRPqpIIHRDLKVENVLISSH 189
.dgtvKiaDFGLArlle.............sssklttfvGTpwYmmAPEv
++ + ++DFG A+ + ++ + + ++ +++tt + Y+ +PE
F35G12.3b 190 kPPHYVLCDFGSATTQIlsvekygveyvksEVERNTTMC----YR-SPEM 234
ileg...rgysskvDvWSlGviLyElltggplfpgadlpaftggdevdql
+ ++ +++ k+D+W+lGv+Ly l++
F35G12.3b 235 -IDFysgLEIGLKSDIWALGVLLYRLCFF--------------------- 262
iifvlklPfsdelpktridpleelfriikrpglrlplpsncSeelkdLlk
Pf+ + ++ + +++ +p +n+++e k L+
F35G12.3b 263 -----CVPFE--------ESPLAIQSVNYQ----FPSVPNIPDEIKVLIY 295
kcLnkDPskRpGsatake<-*
+L+ D ++Rp ++ +
F35G12.3b 296 MLLDIDVNRRP---SIYQ 310
Amb_V_allergen: domain 1 of 1, from 325 to 334: score 5.0, E = 3.6
*->SkeICsKkCt<-*
S eI +KkCt
F35G12.3b 325 SEEIQNKKCT 334