Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F35G2.4
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Query: F35G2.4 CE05811 locus:phy-2 prolyl 4-hydroxylase alpha subunit status:Partially_confirmed TR:Q20065 protein_id:CAA93469.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily 77.7 1.7e-20 1
TPR TPR Domain 7.1 3.4 1
Nup133 Nup133 nucleoporin 2.2 3.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Nup133 1/1 207 218 .. 536 547 .] 2.2 3.9
TPR 1/1 206 239 .. 1 34 [] 7.1 3.4
2OG-FeII_Oxy 1/1 401 509 .. 1 121 [] 77.7 1.7e-20
Alignments of top-scoring domains:
Nup133: domain 1 of 1, from 207 to 218: score 2.2, E = 3.9
*->eLveYLSFSLYs<-*
e++eYL++SLY
F35G2.4 207 EILEYLAYSLYQ 218
TPR: domain 1 of 1, from 206 to 239: score 7.1, E = 3.4
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+e++ l++ ++++g+ A+ ++ ++ Pn+
F35G2.4 206 WEILEYLAYSLYQQGNVRRALSLTKRLAKIAPNH 239
2OG-FeII_Oxy: domain 1 of 1, from 401 to 509: score 77.7, E = 1.7e-20
*->naeslrvnyYppvPcpqelaskktsspdlglglgpHtDde.......
++e l+v++Y+ lg+++ pH+D++++++++
F35G2.4 401 TSEELQVANYG-----------------LGGHYDPHFDFArkeekna 430
.......nrilTillqlsdvdekdggggLqfpkdggwidvppgPg.alvv
++ +++nri+T+l+++s+++ gg ++f ++ ++++ P + +++
F35G2.4 431 fktlntgNRIATVLFYMSQPE---RGGATVFNHL----GTAVFPSkNDAL 473
niGdllqvlsnGryksvlHrVlpntgegeRiSiafflrp<-*
++++ + +++ + +++H+++p++ g ++ ++ ++++
F35G2.4 474 FWYN--LRRDGEGDLRTRHAACPVL-LGVKWVSNKWIHE 509