Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F35H10.10
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Query: F35H10.10 CE24945 status:Confirmed TR:Q20073 protein_id:AAA81683.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
7tm_3 7 transmembrane receptor (metabotropic 280.6 1.7e-80 1
Acyl_transf_3 Acyltransferase family 3.4 5.4 1
squash Squash family serine protease inhibitor 3.0 3.6 1
Pro_CA Carbonic anhydrase 2.8 9.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
squash 1/1 479 508 .. 1 30 [] 3.0 3.6
Acyl_transf_3 1/1 1009 1056 .. 395 464 .] 3.4 5.4
7tm_3 1/1 1024 1271 .. 1 283 [] 280.6 1.7e-80
Pro_CA 1/1 1274 1287 .. 1 14 [. 2.8 9.5
Alignments of top-scoring domains:
squash: domain 1 of 1, from 479 to 508: score 3.0, E = 3.6
*->riCPrilmeCkrDsDClaeCvCleegeyCG<-*
P ++m r D + +C +CG
F35H10.10 479 GNPPTVIMSSLRSADQRLRSICAPYRPFCG 508
Acyl_transf_3: domain 1 of 1, from 1009 to 1056: score 3.4, E = 5.4
*->aywklttggdmlikaillgfvflsvlqqygafwlltsnlgllllall
++ + ttg++ ++++++ ++l+l+++l
F35H10.10 1009 VFEHITTGHW---------------------RDHPHNYVLLALITVL 1034
vsillaillhefvEkpylkllsr<-*
v++++a+l+ +v k+yl+ +
F35H10.10 1035 VVVAIAVLVLVLV-KLYLRVVKG 1056
7tm_3: domain 1 of 1, from 1024 to 1271: score 280.6, E = 1.7e-80
*->lgivlvalAvlGLivltlfvlvvFvkhrdTPiVKasnreLSYlLLiG
+++l++++vl v++++ ++v v+ + + V + n++L LLiG
F35H10.10 1024 NYVLLALITVL---VVVAIAVLVLVLVKLYLRVVKGNQSLGISLLIG 1067
lilcylcsflFIgkGtvekPstwsCilRrilfGlgFtlcySalLaKTirV
+i++y++ f+F+++ P++ +C+lR il+Glg+t+c++ ++aK++++
F35H10.10 1068 IIILYSTAFFFVFD-----PTDSVCRLRVILHGLGYTICFGVMIAKATQL 1112
lriFrgakkpgstqkpkfispwaqvlivliltliQviicviWLvvePPrp
+++ + g++ + ++is+w+++l+ ++++++Q+++++ W++ ++++
F35H10.10 1113 RNAET----LGFG-TAIHISFWNYWLLLFFIVGVQIALSISWFLEPFMST 1157
didiysekekeedeDvsiapiileCnkgsvvaFlvvLgYdglLavlctll
+ i+++ ++ ++C++g+ v+F+v+++Y ++L+++++++
F35H10.10 1158 IGVIDTNVQR------------MMCTMGK-VEFVVSNFYVMILIFMALFI 1194
AFltRnlPvdnFNEAKfItFSMYnvltfCiVWvAFiPaYlstpgsaedyk
+l+Rn++ +n++E+K++++S+ +++++ WvA+i++Yl+ ++ +
F35H10.10 1195 SMLNRNIK-RNYKETKWLLYST---VLCFFTWVAWITLYLVLDH-----E 1235
vqvaveifsilaSstvlLgclFaPKcYIILfkPekN<-*
++++v+++ ++a++t+lLg+lF+PK+YI+L ++
F35H10.10 1236 FRDTVIVVELVACATILLGFLFGPKIYILLSYEPVV 1271
Pro_CA: domain 1 of 1, from 1274 to 1287: score 2.8, E = 9.5
*->FktekyeknpaLFk<-*
Fk+ ++ + +LF+
F35H10.10 1274 FKRDPFPNHTDLFE 1287