hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F35H8.5
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Query:  F35H8.5  CE00983  locus:exc-7 HUD status:Partially_confirmed TR:Q20084 protein_id:CAA85327.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
rrm             RNA recognition motif. (a.k.a. RRM, R   245.0    1.1e-70   3
DbpA            DbpA RNA binding domain                   7.3          1   1
tRNA_synt_1c_R1 Glutaminyl-tRNA synthetase, non-speci     4.2       0.95   1
RSV_NS2         Respiratory synctial virus non-struct     3.3        5.5   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
tRNA_synt_1c_R1   1/1      53    66 ..     1    14 [.     4.2     0.95
rrm               1/3      44   115 ..     1    77 []    92.6  8.4e-26
DbpA              1/1      91   119 ..    61    89 .]     7.3        1
rrm               2/3     130   201 ..     1    77 []    73.7  3.1e-20
RSV_NS2           1/1     249   266 ..   107   124 .]     3.3      5.5
rrm               3/3     376   446 ..     1    77 []    78.7    1e-21

Alignments of top-scoring domains:
tRNA_synt_1c_R1: domain 1 of 1, from 53 to 66: score 4.2, E = 0.95
                   *->sakeeLlaLFsqiG<-*
                      ++ ee ++LF++iG
     F35H8.5    53    MTQEEVRSLFTSIG    66

rrm: domain 1 of 3, from 44 to 115: score 92.6, E = 8.4e-26
                   *->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
                      l ++ Lp+ +t+e+++ lF  +G+i+s+k+v+D     k+tg+s G+
     F35H8.5    44    LIINYLPQGMTQEEVRSLFTSIGEIESCKLVRD-----KVTGQSLGY 85

                   aFVeFeseedAekAlealnGkelggrklrv<-*
                   +FV++  eedA +A++++nG  l++++++v
     F35H8.5    86 GFVNYVREEDALRAVSSFNGLRLQNKTIKV    115

DbpA: domain 1 of 1, from 91 to 119: score 7.3, E = 1
                   *->vpegmadavLkklkgtrikGkqlrvrllk<-*
                      v+e++a ++   ++g+r  +k+++v+ ++
     F35H8.5    91    VREEDALRAVSSFNGLRLQNKTIKVSYAR    119

rrm: domain 2 of 3, from 130 to 201: score 73.7, E = 3.1e-20
                   *->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
                      l+V+++p+++t ++L+ +F++fG+i   +i  D      +tg skG
     F35H8.5   130    LYVSGIPKSMTLHELESIFRPFGQIITSRILSD-----NVTGLSKGV 171

                   aFVeFeseedAekAlealnGkelggrklrv<-*
                   +FV+F+++++A+ A+++lnG +  g+   +
     F35H8.5   172 GFVRFDKKDEADVAIKTLNGSIPSGCSEQI    201

RSV_NS2: domain 1 of 1, from 249 to 266: score 3.3, E = 5.5
                   *->GiKPtkntPviYKYDLnP<-*
                      Gi P ++ P+  KY   P
     F35H8.5   249    GIGPMHHAPITSKYRYSP    266

rrm: domain 3 of 3, from 376 to 446: score 78.7, E = 1e-21
                   *->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
                      lfV NL+ d+++  L +lFs+fG iv++ki +D       t ++kG+
     F35H8.5   376    LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD------LTQQCKGY 416

                   aFVeFeseedAekAlealnGkelggrklrv<-*
                   aFV + ++ +A +A+ +lnG+ l g++l v
     F35H8.5   417 AFVSMSNYTEAYNAMLSLNGTNLAGKTLQV    446

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