hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F36A2.4
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Query:  F36A2.4  CE24949   potassium channel protein status:Predicted TR:P90863 protein_id:CAB03071.2

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
fn3       Fibronectin type III domain                    59.4    1.1e-15   2
ion_trans Ion transport protein                          45.0    5.2e-11   2
TrkH      Cation transport protein                        7.8       0.32   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
ion_trans   1/2     156   207 ..   173   228 .]    19.1  0.00055
TrkH        1/1     181   229 ..     1    49 [.     7.8     0.32
ion_trans   2/2     269   338 ..   149   228 .]    34.4    4e-08
fn3         1/2     425   506 ..     1    84 []    40.4  3.3e-10
fn3         2/2     517   604 ..     1    84 []    19.0   0.0005

Alignments of top-scoring domains:
ion_trans: domain 1 of 2, from 156 to 207: score 19.1, E = 0.00055
                   *->dnfgeaflwlFqtlTteGwgdimpdtlagtvlgkiyfvifiilggfl
                      ++f +++++++++lT++G+g + p+    t+ g +++vi++++g+ l
     F36A2.4   156    WDFANSVFFTTTMLTSIGYGYVAPS----TFGGRLFGVIYCLIGIPL 198

                   llNlfiavi<-*
                   +l  +  v
     F36A2.4   199 TLVTVANVA    207

TrkH: domain 1 of 1, from 181 to 229: score 7.8, E = 0.32
                   *->elggieyrslkrlikivlsyfftieligfvllliwilyvllysaviv
                      ++gg++++ + +li i+l  + ++++  f+  +i++l++ l+  ++
     F36A2.4   181    TFGGRLFGVIYCLIGIPLTLVTVANVAKFLSETIFFLHYELWNKCLE 227

                   sk<-*
                   +k
     F36A2.4   228 WK    229

ion_trans: domain 2 of 2, from 269 to 338: score 34.4, E = 4e-08
                   *->iigvqlfggelnkccnpingntnFdnfgeaflwlFqtlTteGwgdim
                      +++v+++g +      ++ ++++ ++++e++++ F+++ t+G+gdi
     F36A2.4   269    FFFVFVYGCIAA----WVVRYWETWTYVESLYFIFISILTVGFGDIR 311

                   pdtlagtvlgkiyfvifiilggflllNlfiavi<-*
                   p     ++  + +  + ++++g++l+++++ v+
     F36A2.4   312 P-----SPGNIWVT-LAFVVVGVILTTMCMDVV    338

fn3: domain 1 of 2, from 425 to 506: score 40.4, E = 3.3e-10
                   *->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge..
                      P++P++ +v +++++s++l W pp+   p   Y+++yR  k +++ +
     F36A2.4   425    PDPPSDCQVVSTSAYSVRLAWAPPFSPDPDLTYNIRYR-LKHNEDak 470

                   wnelt.vpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
                    +el++++g+t  +++      + Ye+r++A+n     eS
     F36A2.4   471 VRELRgIKGNT--VEIMSVDSCSLYEFRITAHNKF--GES    506

fn3: domain 2 of 2, from 517 to 604: score 19.0, E = 0.0005
                   *->P.saPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge
                      P+  P+ + +t ++++++ l+W+pp + + ++ +Y v y  ++n +
     F36A2.4   517    PqLSPQHILATRLNANTIELTWEPPYkKSHEVKNYVV-Y-FTENPNA 561

                   ...wneltvpgtttsytltgLkPgteYevrVqAvnggG..GpeS<-*
                   + ++ e++  +   ++++ +L+ +  Y ++ +Av  +G+++p S
     F36A2.4   562 slsEWEKIPVNGR-RVVFPDLRFDWFYMFSATAVFKDGqrSPLS    604

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