Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F36A2.6
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Query: F36A2.6 CE09945 locus:rps-15 40S ribosomal protein S15 status:Confirmed TR:Q9XVP0 protein_id:CAB03065.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ribosomal_S19 Ribosomal protein S19 122.5 1.2e-34 1
Pox_F12L Poxvirus F12L protein 6.1 0.36 1
Man-6-P_recep Cation-dependent mannose-6-phosphate re 4.4 2.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Man-6-P_recep 1/1 23 45 .. 256 278 .] 4.4 2.1
Pox_F12L 1/1 60 92 .. 1 33 [. 6.1 0.36
Ribosomal_S19 1/1 53 134 .. 1 81 [] 122.5 1.2e-34
Alignments of top-scoring domains:
Man-6-P_recep: domain 1 of 1, from 23 to 45: score 4.4, E = 2.1
*->YRGvGDDqLGEEsEERDDHLLPm<-*
YRGv DqL + s E LLP
F36A2.6 23 YRGVDLDQLLDMSREQFTKLLPC 45
Pox_F12L: domain 1 of 1, from 60 to 92: score 6.1, E = 0.36
*->lkLlgklcktaksrdilevvetlkkkprenvvl<-*
l+L+ k++k +k+ +le ++t k ++r ++l
F36A2.6 60 LALIAKVQKAKKAAGVLEKPATVKTHLRDMIIL 92
Ribosomal_S19: domain 1 of 1, from 53 to 134: score 122.5, E = 1.2e-34
*->RSlkkgpFvdlkllkkik.klnekekkevikTWSRrStIlPeMVGht
R+lk+++ +++ + +k+k+ + ek++ +kT++R+++IlPe VG +
F36A2.6 53 RGLKRKHLALIAKVQKAKkAAGVLEKPATVKTHLRDMIILPELVGGV 99
iaVYNGKefvpVkItpeMvGHKLGEFapTRkfrgH<-*
i++YNGK f++ +I+peM+G +LGEFa+++k+++H
F36A2.6 100 IGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKH 134