Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F36F12.1
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Query: F36F12.1 CE17781 status:Partially_confirmed TR:O76403 protein_id:AAC19200.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF23 Domain of unknown function 550.1 1.5e-161 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF23 1/1 60 518 .] 1 509 [] 550.1 1.5e-161
Alignments of top-scoring domains:
DUF23: domain 1 of 1, from 60 to 518: score 550.1, E = 1.5e-161
*->kafiycrYydcnskeigknafasvvsmnk.tf.hipnfpesvvsCpr
+afi+++Y++ nsk++gkna+a+v +m+k+ ++++++f + +v++++
F36F12.1 60 NAFIHNAYFYSNSKSLGKNAVAIVATMHKdAVtDLNDFILKIVGTNS 106
rygaktvs.....fyvhhscyyvtvvaganllpnlskleivsigtrvsfe
++ ++t ++ ++++++++sc+y+tv++++n+l+++sklei++++++
F36F12.1 107 TNRFVTDGkltteQNPDESCKYTTVLIQTNTLDSMSKLEIETRNGL---- 152
knegdeveeiPvklirrkkttnvdalspepykeppheltvCvaPlYgaEe
v+ +P+ +++ + +++++C+aPl+++ e
F36F12.1 153 ------VT-FPFSEPKVQ---------------STKPVVFCIAPLFAS-E 179
qWlnfvefvEhyklqGAthFyfYlhsiteydfkvLdeYeklGyveiipWp
qW+ f++++ +++++GA h+++Y++++ e ++++++e +lG+v+ +pW+
F36F12.1 180 QWQSFLMQLQVSNKFGA-HLHVYMMTMLENYYQMVRELGQLGIVTTQPWL 228
dmkfrsdsiphkypepnsnVelrnqaaAqnDClLrsKeaskwiafaDlDE
+ kf+++++p+ +ep +n+elrn aaA++DClL++Kea+++i f+ + +
F36F12.1 229 TPKFSQVARPF--LEPSRNSELRNPAAAFTDCLLQYKEAAQFIGFMEIED 276
rLiptngpttlleflsrfikdpnigalqFrkrwvlkvkkspekyendfqL
L+p n t+++ef++++ ++ +i+al++++++ ++vk+s+++++ +L
F36F12.1 277 LLFPLNTLTYYEEFEREYEGSYQISALYYQVVEQQSVKYSSPENQ---SL 323
eeemsflkyhntseigpswhtlvfldqrktgKvIvrPekvnsmwiHsvrk
++++ ++ +t k+g+ IvrPe++ns+w +++++
F36F12.1 324 GALLTRAQSGET---------------LKMGRAIVRPERYNSTWAYYSTE 358
fpknt.ytkkvg.gykvlevppvvcsegvirHyRnvedkdfe.nwveslv
++k++ y++++++++++l+++++ ++ ++ + n+e++++++n +
F36F12.1 359 AEKHPvYLAEQDdKPHYLTRKEI--LTNAFLRFSNLEYTSEIdNSTVI-- 404
iepkfyfges.eiiseedikeidddlqkmlkspeikklasklPkidyyhp
p+++++++++++see+++eid+ l+ +l++p+i+++ ++lP +dyy++
F36F12.1 405 --PMNPLTTDrQLLSEEQLAEIDQELKETLLMPSIQEFVKQLPTEDYYST 452
ivfkcYnekfygslpkqks.ii.cpNacicklpqrenikcstsdacyqsm
+ c l++qk+++ +c+N++ cklp+++ i+c +sd y+s+
F36F12.1 453 KLKAC--------LEAQKQgKGqCVNTKACKLPNNDKIPCRHSDGLYHSG 494
pnLtpnvyhrvknvydsrdigCyqq<-*
+ p+++h+v+ y++r+ gCy
F36F12.1 495 KVTKPYTFHFVTEYYFTRNLGCY-E 518