Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F36H5.1
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Query: F36H5.1 CE27156 status:Partially_confirmed TR:P91300 protein_id:AAK31520.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MATH MATH domain 543.3 1.6e-159 6
hexapep Bacterial transferase hexapeptide (thre 8.1 3.2 1
YceI YceI like family 6.4 1.1 1
Peptidase_S35 36KDa capillovirus serine protease (S35 2.0 8.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MATH 1/6 13 132 .. 1 159 [] 31.7 1.9e-07
MATH 2/6 150 262 .. 1 159 [] 62.0 8.5e-16
YceI 1/1 239 265 .. 151 179 .] 6.4 1.1
MATH 3/6 282 399 .. 1 159 [] 139.7 5.3e-38
MATH 4/6 430 544 .. 1 159 [] 85.3 3.2e-22
MATH 5/6 566 679 .. 1 159 [] 134.2 2.3e-36
Peptidase_S35 1/1 701 732 .. 342 374 .] 2.0 8.1
MATH 6/6 696 809 .. 1 159 [] 124.2 2.4e-33
hexapep 1/1 800 817 .. 1 18 [] 8.1 3.2
Alignments of top-scoring domains:
MATH: domain 1 of 6, from 13 to 132: score 31.7, E = 1.9e-07
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
tikn+Sk+ ge+ ++ + +++ n+ W+ l+i + ++
F36H5.1 13 TIKNVSKFS-------AGEIQFS-DETIWRNLIWK---LKISKLDD- 47
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
flg+ ++C + ++ + i + k+vsdnG
F36H5.1 48 ------FLGVSVYCSQTSNTW----IKDCQIVGILECKIVSDNGE----- 82
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
+ + + + p ++ + f +F++Wd++++++ l
F36H5.1 83 ----THEGIR-----LLNMKPPRKIEGPMIDFREFLKWDEMKKNF---LT 120
dDsiiiEaeVkI<-*
Ds+ i + V+
F36H5.1 121 ADSVKIVVIVNN 132
MATH: domain 2 of 6, from 150 to 262: score 62.0, E = 8.5e-16
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
t+k+ +++ e+e ++ ++ e+ + Wr ++++++ g
F36H5.1 150 TFKHLARFE-------ENETQFS-DSKEWAGTSWR---ICVKKEEG- 184
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
+lg yL+C+ + + s + + ++l++ s +
F36H5.1 185 ------YLGCYLQCESNPNTS------LICVSAICELRIKSKENYE---- 218
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
+ + F +pt g++k +++W+dL ++y lv
F36H5.1 219 ----IFDLDV------LEFSRPTMLGNSK-----LMKWEDLISNY---LV 250
dDsiiiEaeVkI<-*
Ds++iEa +
F36H5.1 251 SDSVTIEADLEA 262
YceI: domain 1 of 1, from 239 to 265: score 6.4, E = 1.1
*->lkwnqsleaggpmvgdeVkveidleavkq<-*
+kw ++++ +v+d+V++e+dlea+
F36H5.1 239 MKWE--DLISNYLVSDSVTIEADLEAYNE 265
MATH: domain 3 of 6, from 282 to 399: score 139.7, E = 5.3e-38
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
+ ++S+i+ ege++++ e+rfnipWr + ++r g
F36H5.1 282 QFYDVSRIE-------EGESRFS-AFEKRFNIPWR---IELKRVSG- 316
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
fl+++LhC + ++ +l iet++++ lvs nGk
F36H5.1 317 ------FLEIHLHCGEN--AT----FLYHQIETDCWFNLVSTNGKH---- 350
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
l+++++ vF++ + ++ k+ kk i+Wdd+++dy ++
F36H5.1 351 ----LMRQMS------AVFCRDVDMESLKKSLKKVIRWDDMMTDY---VI 387
dDsiiiEaeVkI<-*
+Ds+iiEa+++I
F36H5.1 388 NDSFIIEAHIEI 399
MATH: domain 4 of 6, from 430 to 544: score 85.3, E = 3.2e-22
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
++ n+S+++ ++e ++e r+ ipWr ++ +r +
F36H5.1 430 KVNNVSRFL-------DDEKQWG-NTELRYEIPWR---IQAKRTYD- 464
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
fl+ yL C+ e + + l+ i te t lvs nG+
F36H5.1 465 ------FLEMYLFCDGE----G--NGLDQLIKTEVTCNLVSTNGNN---- 498
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
+ ++ k +Fekp g g +k Fi+W+d+ + + l+
F36H5.1 499 ----FRRTSK------LCFEKPGGQGIIK-----FIKWNDMIESF---LN 530
..dDsiiiEaeVkI<-*
+ +Ds+i+Ea+VkI
F36H5.1 531 plEDSLIVEAHVKI 544
MATH: domain 5 of 6, from 566 to 679: score 134.2, E = 2.3e-36
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
t++++S+ + eg ++ +ee++++ W+ ++++ +g
F36H5.1 566 TVRDVSSAE-------EGNVVFS-ATEEWYDVQWS---ISMKYING- 600
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
f++l L C+k ++ Wsiet f+l lv +nGk+
F36H5.1 601 ------FVELLLSCDKDLNAH-----EAWSIETNFQLILVGANGKR---- 635
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
lt + h+Fekp+++g +k +i+W+d++d+y v
F36H5.1 636 ----LTDYFE------HTFEKPDSIGDSK-----LIRWEDMLDQY---AV 667
dDsiiiEaeVkI<-*
+Ds+++Ea+V+
F36H5.1 668 EDSLTVEARVNF 679
Peptidase_S35: domain 1 of 1, from 701 to 732: score 2.0, E = 8.1
*->SelseG.sslsnaelrrfkkaPWredkgkeDgSe<-*
S+ eG++ s e++ aPWr ++ke +
F36H5.1 701 SNVREGeFHFSKTETH--CDAPWRISLKKEEACI 732
MATH: domain 6 of 6, from 696 to 809: score 124.2, E = 2.4e-33
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
t+k+ S+++ ege +++ ++e++ + pWr ++++++
F36H5.1 696 TVKKLSNVR-------EGEFHFS-KTETHCDAPWR---ISLKKEEA- 730
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
+ +yLhC+k+ +s + +Wsi++e +l l s G+
F36H5.1 731 ------CILIYLHCDKL--LS---NDENWSIQVEVQLVLGSETGRT---- 765
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
lt k++ h+F++p+g+ w+k + W+dLe+d+ +v
F36H5.1 766 ----LTDKVT------HIFNEPEGIHWTK-----DLTWEDLERDF---MV 797
dDsiiiEaeVkI<-*
dDs+ iEa+VkI
F36H5.1 798 DDSVKIEARVKI 809
hexapep: domain 1 of 1, from 800 to 817: score 8.1, E = 3.2
*->gviIGdnvvIgpgvvIgd<-*
v+I+++v+I v+I +
F36H5.1 800 SVKIEARVKIVKPVEIDN 817