Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F36H5.2b
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Query: F36H5.2b CE31807 status:Partially_confirmed TN:AAM98020 protein_id:AAM98020.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MATH MATH domain 423.7 1.7e-123 5
hexapep Bacterial transferase hexapeptide (thre 8.1 3.2 1
YceI YceI like family 7.6 0.47 1
Ribosomal_L31 Ribosomal protein L31 5.1 8.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MATH 1/5 3 31 .. 123 159 .] 20.1 0.0003
YceI 1/1 8 34 .. 151 179 .] 7.6 0.47
Ribosomal_L31 1/1 67 75 .. 63 71 .] 5.1 8.4
MATH 2/5 51 164 .. 1 159 [] 110.6 3.1e-29
MATH 3/5 179 293 .. 1 159 [] 76.3 9.6e-20
MATH 4/5 315 428 .. 1 159 [] 116.1 6.5e-31
MATH 5/5 445 558 .. 1 159 [] 119.8 5.1e-32
hexapep 1/1 549 566 .. 1 18 [] 8.1 3.2
Alignments of top-scoring domains:
MATH: domain 1 of 5, from 3 to 31: score 20.1, E = 0.0003
*->gwgksGfkkFisWddLeddyngylvdDsiiiEaeVkI<-*
g++k +++W+dL ++y lv Ds++iEa +
F36H5.2b 3 GNSK-----LMKWEDLISNY---LVSDSVTIEADLEA 31
YceI: domain 1 of 1, from 8 to 34: score 7.6, E = 0.47
*->lkwnqsleaggpmvgdeVkveidleavkq<-*
+kw ++++ +v+d+V++e+dlea+ +
F36H5.2b 8 MKWE--DLISNYLVSDSVTIEADLEAYNG 34
Ribosomal_L31: domain 1 of 1, from 67 to 75: score 5.1, E = 8.4
*->RFnkKYnik<-*
+F+k++ni+
F36H5.2b 67 KFEKRFNIP 75
MATH: domain 2 of 5, from 51 to 164: score 110.6, E = 3.1e-29
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
+ ++S i+ e +++ + e+rfnipWr + ++r g
F36H5.2b 51 QFSDVSCIE-------IRERRFS-KFEKRFNIPWR---IELKRVSG- 85
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
fl+++LhC + ++ + +iet++++ lvs nGk
F36H5.2b 86 ------FLEIHLHCGEN--AT----FDYHKIETDCWFNLVSTNGKH---- 119
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
l+++++ +F + +++ + + k i+Wdd+++d+ ++
F36H5.2b 120 ----LMRQMS------AKFYRISDIKSLR----KVIRWDDMMTDF---VI 152
dDsiiiEaeVkI<-*
+Ds+iiEa+++I
F36H5.2b 153 NDSFIIEAHIEI 164
MATH: domain 3 of 5, from 179 to 293: score 76.3, E = 9.6e-20
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
++ n+S+++ ++e ++e r+ ipWr ++ +r +
F36H5.2b 179 KVNNVSRFL-------DDEKQWG-NTELRYEIPWR---IQAKRTYD- 213
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
fl+ yL C+ e + + l+ i te t lvs nG+
F36H5.2b 214 ------FLEMYLFCDGE----G--NGLDQLIKTEVTCNLVSTNGNN---- 247
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
+ ++t+ F kp g + Fi+W+d+ + + l+
F36H5.2b 248 ----FRRTTE------LNFKKPGGQSISE-----FIKWNDMIESF---LN 279
..dDsiiiEaeVkI<-*
+ +Ds+i+Ea+VkI
F36H5.2b 280 plEDSLIVEAHVKI 293
MATH: domain 4 of 5, from 315 to 428: score 116.1, E = 6.5e-31
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
t++++S+ + eg + +ee++++ W+ ++++ +g
F36H5.2b 315 TVRDVSSAE-------EGNVVFC-ATEEWYDVQWS---ISMKYING- 349
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
f++l L C+k ++ Wsie++ + lv +nGk+
F36H5.2b 350 ------FVELLLSCDKDLNAH-----EAWSIEASVQRILVGANGKR---- 384
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
lt + h+Fekp+++g +k +i+W+d++d+y v
F36H5.2b 385 ----LTDYFE------HTFEKPDSIGDSK-----LIRWEDMLDQY---AV 416
dDsiiiEaeVkI<-*
+Ds+++Ea+V
F36H5.2b 417 EDSLTVEARVVY 428
MATH: domain 5 of 5, from 445 to 558: score 119.8, E = 5.1e-32
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
t+k+ S+++ ege +++ ++e + + pWr ++++++
F36H5.2b 445 TVKKLSNVR-------EGEFHFS-KTEQHCDAPWR---ISLKKEEA- 479
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
+ +yLhC+k+ +s + Wsi++e +l l s G+
F36H5.2b 480 ------CILIYLHCDKL--LS---NDEHWSIQVEVQLVLGSETGRT---- 514
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
lt k++ h+F++p+g+ w+k + W+dLe+d+ +v
F36H5.2b 515 ----LTDKVT------HIFNEPEGIHWTK-----DLTWEDLERDF---MV 546
dDsiiiEaeVkI<-*
dDs+ iEa+VkI
F36H5.2b 547 DDSVKIEARVKI 558
hexapep: domain 1 of 1, from 549 to 566: score 8.1, E = 3.2
*->gviIGdnvvIgpgvvIgd<-*
v+I+++v+I v+I +
F36H5.2b 549 SVKIEARVKIVKPVEIDN 566