Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F36H9.3
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Query: F36H9.3 CE09969 locus:dhs-13 alcohol dehydrogenase status:Partially_confirmed TR:O16619 protein_id:AAB66092.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
adh_short short chain dehydrogenase 236.2 4.6e-67 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
adh_short 1/1 10 253 .. 1 271 [] 236.2 4.6e-67
Alignments of top-scoring domains:
adh_short: domain 1 of 1, from 10 to 253: score 236.2, E = 4.6e-67
*->tgKvaLvTGassGIGlaiAkrLakeGakVvvvdrreekaeqvaaelk
t++vaLvT ++GIG+aiAk+L ++Ga Vvv+ r +e+ ++++a+l+
F36H9.3 10 TDRVALVTASTKGIGFAIAKQLGAAGASVVVCSRKKENVDEAVAALR 56
aelGdralfiqlDvtdeeqvkaavaqaverlGdrlDvLVNNAGilgdgpp
e+ a++ ++ v ++ +++++ ++r+ +lD+LV NA +++ ++
F36H9.3 57 LENI-DAHGTTAHVGNKSDRTKLIDFTLDRFT-KLDILVSNAAVNPHYGD 104
feelseedwervidvNltGvflltravlpamdhmlkrkgGrIvNisSvaG
+ + ++ +w++++d+N++++f+lt+++ p h+++ ++G++v++sSvaG
F36H9.3 105 LMKVTDSQWDKLLDLNVKSAFELTKEAVP---HLEASGRGNVVFVSSVAG 151
lrvgvpglsaYsASKaavigltrsLAlElaphgtgIrVnavaPGgvdTdm
+ + aYs K ++gl++sLAl la+++ IrVn++aPG++ Td
F36H9.3 152 Y-SPMNEIGAYSVMKTTLTGLSKSLALNLARRN--IRVNSIAPGIIQTD- 197
tkalrsrlieakkkvrevadiadpeleeritstitplgrygvtpeeiana
+ + + +d+ ++++s i +++r+g +p+e+a+a
F36H9.3 198 FSQVL------------F---SDESEKQKWLSQI-AQRRFG-DPDECAEA 230
vlfLasdgasysvtgqtlnvdggi<-*
v+fL+sd+asy ++g+t+ ++gg+
F36H9.3 231 VAFLVSDEASY-ISGETIGINGGM 253