Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F37B1.5
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Query: F37B1.5 CE09992 glutathione S-transferase status:Partially_confirmed TR:Q93698 protein_id:CAB02291.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GST_N Glutathione S-transferase, N-terminal domain 71.1 3.3e-19 1
GST_C Glutathione S-transferase, C-terminal domain 33.7 3.1e-08 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GST_N 1/1 3 74 .. 1 88 [] 71.1 3.3e-19
GST_C 1/1 80 194 .. 1 121 [] 33.7 3.1e-08
Alignments of top-scoring domains:
GST_N: domain 1 of 1, from 3 to 74: score 71.1, E = 3.3e-19
*->sstlklfngrgspraervrillalekGveyeivrvdleagehksnkr
s++l++f +rg + e++r+l +Gv++e+vr +++
F37B1.5 3 SYKLTYFFFRG--LGEPIRLLFH-LAGVQFEEVRMNPD--------- 37
peflklnPlmLpfgqvPaLvdgdGdgkkltESrAIarYlar<-*
+ +l ++ p++q+P+L ++ g+ l +S+AI+rYlar
F37B1.5 38 QTWLDIKDST-PMKQLPVLNID---GFELPQSGAILRYLAR 74
GST_C: domain 1 of 1, from 80 to 194: score 33.7, E = 3.1e-08
*->Gkdpderaaaerarwdmiedsrfadlrldlawlpygkpergaekdee
Gk+p +e a +d + d f d +++ +++ +k +e
F37B1.5 80 GKTP-----EEEAWVDAVHD-LFKDFLAEFKKFAAERRS---GKSAE 117
evee.....alekllkvlealeeeLkghgkkylvGdkltlADialapald
eve+ +++ l++ + ++ +l++ L+++++ +l G+ +t+AD+++++ l+
F37B1.5 118 EVEKfrsefFLPARNTYFNILNGLLEKSNSGFLIGSDITFADLVVVDNLL 167
wlerldpdplfreeyPnLkawrkrvaarp<-*
l +++ +e+ +L+a+r++v++ p
F37B1.5 168 TLKNYGLFDE--SEFTKLAALREKVNSYP 194