Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F37B1.8
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Query: F37B1.8 CE09995 glutathione S-transferase status:Partially_confirmed TR:Q93701 protein_id:CAB02294.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GST_N Glutathione S-transferase, N-terminal domain 63.1 6.8e-17 1
GST_C Glutathione S-transferase, C-terminal domain 48.7 1.8e-12 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GST_N 1/1 3 73 .. 1 88 [] 63.1 6.8e-17
GST_C 1/1 79 193 .. 1 121 [] 48.7 1.8e-12
Alignments of top-scoring domains:
GST_N: domain 1 of 1, from 3 to 73: score 63.1, E = 6.8e-17
*->sstlklfngrgspraervrillalekGveyeivrvdleagehksnkr
s++ ++f +rg + e+vr+l ++ +++++r ++
F37B1.8 3 SYKFTYFPFRG--LGEPVRLLFH-LADCPFKDERFSF---------- 36
peflklnPlmLpfgqvPaLvdgdGdgkkltESrAIarYlar<-*
+e+ +++ + p+gq+P+L ++ g+ + +S AI+rYla
F37B1.8 37 EEWGAVKSKS-PMGQLPILGVD---GLEIPQSAAILRYLAL 73
GST_C: domain 1 of 1, from 79 to 193: score 48.7, E = 1.8e-12
*->Gkdpderaaaerarwdmiedsrfadlrldlawlpygkpergaekdee
Gk+p ++ra +d ++d rf d + +++ ++ k+ +k ee
F37B1.8 79 GKTP-----EDRAWVDAVVD-RFKDFFVEFKKFLVAKRG---GKSEE 116
evee.....alekllkvlealeeeLkghgkkylvGdkltlADialapald
ev++ ++++ +++ +++ l++ L+++++ +l G+++t+AD++++ l+
F37B1.8 117 EVAKvvsesVVPAMESYFKLLNGLLERSKSGFLIGNSITYADLVVVNNLE 166
wlerldpdplfreeyPnLkawrkrvaarp<-*
l+ +++ +e P+L+a++++v ++p
F37B1.8 167 TLRNFGFLNA--SEQPKLTALLEKVYSQP 193