hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F37B12.2
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Query:  F37B12.2  CE03290   glutamate-cysteine ligase status:Partially_confirmed TR:Q20117 protein_id:CAA90955.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
GCS      Glutamate-cysteine ligase                     1013.8          0   1
S1       S1 RNA binding domain                            7.8        1.5   1
UQ_con   Ubiquitin-conjugating enzyme                     3.3        9.8   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
S1         1/1      41    70 ..    50    79 .]     7.8      1.5
UQ_con     1/1     355   390 ..   143   181 .]     3.3      9.8
GCS        1/1     233   606 ..     1   406 []  1013.8        0

Alignments of top-scoring domains:
S1: domain 1 of 1, from 41 to 70: score 7.8, E = 1.5
                   *->psevlkvGdevkvkvlkvDkergriiLSik<-*
                      + + lk Gde++  ++k+D+++++++ S+k
    F37B12.2    41    HGDQLKWGDEIEYTIVKFDDANKKVRVSCK    70

UQ_con: domain 1 of 1, from 355 to 390: score 3.3, E = 9.8
                   *->LsePnpesPlnaeaGAklykknrGereefekkvrarvek<-*
                      L + n++ Pl  ++ A+++ ++   ++ f++++   +ek
    F37B12.2   355    LIDGNIDEPLAKHI-AHMFIRDP--HQVFRERIEQDDEK    390

GCS: domain 1 of 1, from 233 to 606: score 1013.8, E = 0
                   *->IYMDsMGFGMGCcCLQVTFQApNideARyLYDQLtpicPilLALSAA
                      IYMD+MGFGMGCcCLQVTFQA+N+deAR+LYDQLtpi+PilLALSAA
    F37B12.2   233    IYMDHMGFGMGCCCLQVTFQAVNVDEARWLYDQLTPITPILLALSAA 279

                   TPffrGyLaDqDvRWnvIsAsVDDRtrEErglePLLPkYnknGfGGiakD
                   TP+frG+L+++D+RW++IsAsVDDRt+EErglePL
    F37B12.2   280 TPIFRGKLSNVDSRWDIISASVDDRTPEERGLEPL--------------- 314

                   vknnkfeIsKSRYDSiDvyiskckpNleeYNDiplpInekiyeqLidegk
                    kn+k++I+KSRYDS+D+yi++c   +++YNDipl+++e+iy+qLid++
    F37B12.2   315 -KNSKWVIDKSRYDSTDCYIYPC---SVGYNDIPLQYDETIYKQLIDGN- 359

                   aPiDerLAkHiAHLFIRDPLviFeemIdqDDktsseHFENIQSTNWQtmR
                     iDe+LAkHiAH+FIRDP+++F+e+I+qDD++sseHFE+IQS+NW++mR
    F37B12.2   360 --IDEPLAKHIAHMFIRDPHQVFRERIEQDDEKSSEHFETIQSSNWMNMR 407

                   FKPPtqqatPpkssdiGWRVEFRpmEVQlTDFENAAYsVFVvLLtRaIls
                   FKPP     Pp++++iGWRVEFRp+EVQlTDFENAAY++FVvLLtR+++s
    F37B12.2   408 FKPP-----PPDAPEIGWRVEFRPTEVQLTDFENAAYCCFVVLLTRMMIS 452

                   FsDnlnfyipiSiVdENMKrAhrRdAvLqqKflfRKdIakcnsepedcsf
                   F  +l++++piS+V+ENMKrA+++dAvL+qKflfRK++a+c+s+pe++++
    F37B12.2   453 F--RLTYLMPISMVTENMKRAQQKDAVLNQKFLFRKGLAECKSAPENLKG 500

                   sekctedesedftemtideIiNGehKeggFpGLIPlvRrYLesenvdvdt
                   sekc+ ++s+d++em+ideIiNG  K++gFpGLI+l+R++L+s++vdvdt
    F37B12.2   501 SEKCG-PPSQDIEEMSIDEIING--KKNGFPGLISLIRQFLDSADVDVDT 547

                   RCtieqYLklIskRAsGelpTaAqwmRnFVttHPdYKhDSrvtdeInYDL
                   RCti+qYL++IskRA+Ge++T+A+w+R+FV++HP+YKhDS+v+d+I+YDL
    F37B12.2   548 RCTISQYLNFISKRATGEINTLAHWTRGFVQSHPAYKHDSDVNDNIVYDL 597

                   lrkvdklan<-*
                   l+k+d+++n
    F37B12.2   598 LKKMDAISN    606

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