hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F37B4.7
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  F37B4.7  CE17796   folate transporter status:Partially_confirmed SW:O45166 protein_id:AAK18943.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Folate_carrier  Reduced folate carrier                  912.6   2.2e-286   1
Cation_ATPase_C Cation transporting ATPase, C-terminu     2.6        9.4   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Folate_carrier    1/1       2   396 ..     1   418 []   912.6 2.2e-286
Cation_ATPase_C   1/1     392   423 ..   163   196 .]     2.6      9.4

Alignments of top-scoring domains:
Folate_carrier: domain 1 of 1, from 2 to 396: score 912.6, E = 2.2e-286
                   *->ksWrtlvvlLClYGavkefRPgepFitpYllsPeknftsEqvln.ev
                      ++W+ ++vl+C+YGavkefRP+ep++++Y++  +++++sEq+ln++v
     F37B4.7     2    EQWK-VMVLICMYGAVKEFRPTEPYMYEYQH--TVLNMSEQTLNsQV 45

                   yPvltYSYLavLvPvFLLTDvLrYKPiLvlealSfvavWlLLvfGkSVwh
                   yP++tYSYL++L+P+FLLTDv++YKP+Lv+ea+S++++W+++vfGkSVw+
     F37B4.7    46 YPIWTYSYLITLIPAFLLTDVFLYKPLLVFEAFSYFLCWVIFVFGKSVWS 95

                   mQlmevFYgvamAAeIAYfSYIyslVrkkrYkratsYsRAAvLlGrFlay
                   +Q++evFYg+a+A+eIAYf+YIy++V+k++Yk+at+++RAA+L+GrFlay
     F37B4.7    96 QQVLEVFYGWATATEIAYFAYIYVKVPKTEYKSATAFTRAALLVGRFLAY 145

                   vLgQlLiglntssystLNiISLgaitfsvvLAlfLprvkrseffnrslra
                   +L+QlLigln++systLNiISL+a+t++v+LAl+Lp+v+++e+++++l++
     F37B4.7   146 ALAQLLIGLNWTSYSTLNIISLVAMTIAVFLALILPGVEWKEAYEKKLED 195

                   reeasqqeLesmesgpkrPetgKlekaLkvscrdsffvklleeLveilrn
                   +  ++q++L++++++++      ++++L+    + ffv+l+++L++i+rn
     F37B4.7   196 N--NVQGNLKEIVDQSS------YMDYLR----M-FFVGLRHNLMAIYRN 232

                   PellkWSlWwalnScgyYqvvnYtqvLWkeldpttesankYNGavdAast
                   P++lkWS+W+al+Sc++Yqv+nYtq+LW++l+   esan+YNG+++A+++
     F37B4.7   233 PLILKWSVWSALSSCIFYQVTNYTQTLWGTLP---ESANRYNGITEALVP 279

                   LLgaptdlaagfvkirWarwsklliAvvtalQAgLvFwmsqlhyvhvseI
                   LLg+p+dl++++++++W+rw++ll+Av++++QAgL+Fwmsq+h     +I
     F37B4.7   280 LLGIPADLITRQLNVNWNRWGDLLLAVGSIGQAGLLFWMSQSH-----HI 324

                   wvlYllyvlfRgiYQllvpIAtfqiAssLsseLfgLvFGiNTFvAlaLqs
                   +vlYl+y+++R+iYQl+++IA++++A+sL+s+LfgL+FGiNTFvAl+Lqs
     F37B4.7   325 VVLYLSYIFYRVIYQLTTTIAQSTLAFSLDSRLFGLLFGINTFVALLLQS 374

                   ilTlVViDkrgLgLrvrkqfsl<-*
                   ilT+VViD+++L++r+++++++
     F37B4.7   375 ILTAVVIDWQKLDIRPQFVVYS    396

Cation_ATPase_C: domain 1 of 1, from 392 to 423: score 2.6, E = 9.4
                   *->gthpllslqeW.vvigfsflvfildElrKfikRrr<-*
                      ++++  s++ + v++gf++++ i+   r+f+k +
     F37B4.7   392    FVVY--SCYHLvVAFGFAIIFGIW-ASRRFFKTST    423

[DB home][top]