hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F37C12.7
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Query:  F37C12.7  CE29312    status:Confirmed TR:Q20121 protein_id:AAC48292.3

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
AMP-binding AMP-binding enzyme                          290.2    2.6e-83   2
HTH_4       Ribbon-helix-helix protein, copG family       5.1        8.9   2
B1          Protein L b1 domain                           3.0        6.3   1
RIP         Ribosome inactivating protein                 2.7        6.9   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
RIP           1/1     279   301 ..   280   304 .]     2.7      6.9
AMP-binding   1/2     143   414 ..     1   213 [.   142.0  1.1e-38
B1            1/1     550   572 ..     1    23 [.     3.0      6.3
AMP-binding   2/2     454   619 ..   210   373 .]   147.8  1.9e-40
HTH_4         1/2     639   653 ..    17    32 ..     4.2       17
HTH_4         2/2     668   684 ..    15    32 ..     2.6       48

Alignments of top-scoring domains:
RIP: domain 1 of 1, from 279 to 301: score 2.7, E = 6.9
                   *->gvtnvdekvvkpnvaLLlnvnnpaa<-*
                      +v+  ++  vk+++aL+++ +++
    F37C12.7   279    QVKESTA--VKSDIALIMYTSGTTG    301

AMP-binding: domain 1 of 2, from 143 to 414: score 142.0, E = 1.1e-38
                   *->TYrELderanrlAaaLr.alGvgpGdrVaillpnspelvvailAvlk
                      +Y E+++++ rlAa+ ++    ++   V i+++ +++++++ lA+++
    F37C12.7   143    SYKEVETQVARLAAGIKdLAHEEQNPKVVIFAETRADWLITALACFR 189

                   aGaayvPldpsypaerlayiledsgakllltddallarl...........
                   a  + v+++++++++++a+ + +++a++l+t+++ll+++++ +++ ++ +
    F37C12.7   190 ANVTIVTVYATLGEDAIAHAIGETEATILVTSSELLPKIvtlgkkcptlk 239

                   .....................................s.e.p.ppvdpdd
                   +    ++++ ++++++ ++  +  + + + ++  +  +++  ++     d
    F37C12.7   240 tliyfapvdqkapapelapfrdqfkhvlslsglltrnQeQvKeSTAVKSD 289

                   lAyiiYTSGTTGkPKGVmltHrnlvnlvaala.rf.l.pddaervlllap
                   +A+i+YTSGTTG+PKGV+l H+n+v+ ++++++ +++  +  ++++ ++p
    F37C12.7   290 IALIMYTSGTTGQPKGVILLHQNVVAALLGQGdGVgIiCNA-DTYIGYLP 338

                   plyhfdgsvwelfgpLlaGatlvlvpkftryrdp.alld....liekykv
                     +++ + +   +++L  Ga++   ++ t+++ ++ + +++++++ + ++
    F37C12.7   339 --LAHILELDAELTCLTKGAKVGYSSPLTLHDRAsKIQKgthgDCHALRP 386

                   TvlflvPtllrlllaape..dlssLrlv<-*
                   T + +vP++++++ +a  ++  +s r++
    F37C12.7   387 TLMAAVPAIMDRIFKAVSeeVAASPRFM    414

B1: domain 1 of 1, from 550 to 572: score 3.0, E = 6.3
                   *->tPEedskEevtiKanlifadGst<-*
                      +PE+ +++ +t K  ++fa G +
    F37C12.7   550    QPEKTAEDFITYKGKVYFATGDI    572

AMP-binding: domain 2 of 2, from 454 to 619: score 147.8, E = 1.9e-40
                   *->LrlvlsgGealppellrrlrerfgsggvrlvngYGpTEttvvatanp
                      Lr vlsgG++l++e+ r +   +   ++++v+gYG+TEt+++a++ +
    F37C12.7   454    LRGVLSGGAPLNAETQRFMN-ICM--CCPVVQGYGLTETCGAACVAD 497

                   pg.d.pgsiGrPlpgvevyvlD..eeg.rpvppGevGELyirGwpgvarG
                   + + ++g++G+P+++ ++ +   +e+g  p  +   GE++i+G +++  G
    F37C12.7   498 INdLsTGTVGPPVRCSDIALREwsEGGySPFNDPPQGEILISG-ENISPG 546

                   YlnrPelTaerFvadgwgRmYrTGDlarwdpDGyleilGRiDdqvKi.rG
                   Y+++Pe+Tae F+      ++ TGD++  ++DG l i++R++d+vK+++G
    F37C12.7   547 YYKQPEKTAEDFITYKGKVYFATGDIGQKRDDGSLLIIDRKKDLVKLqHG 596

                   erIepgEiEavLlehPgVaeAaV<-*
                   e+++++ +E +Ll++P V +++V
    F37C12.7   597 EYVSLAKVECALLNCPIVDNICV    619

HTH_4: domain 1 of 2, from 639 to 653: score 4.2, E = 17
                   *->LeelakkrGlSkrSel<-*
                      Le++a+ +G+S  Se+
    F37C12.7   639    LEKIAEAEGVST-SEM    653

HTH_4: domain 2 of 2, from 668 to 684: score 2.6, E = 48
                   *->erLeelakkrGlSkrSel<-*
                      + Lee akk+ lS+ Se+
    F37C12.7   668    KQLEEHAKKSKLSR-SEI    684

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